Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1934 ATGAGGTACTTTTACTTTGATCTTTTGATTCTATTGTGTTTATTGTTCATCTCAAATAGTCATGAGTTAGAACAAGATCAAAACCAAGCTTTGTTAGAATTGAGAATGTTTTTGGAGTTTCCTTCTTCATTGCAAATTATGGAAAATTACAATGTTGACTTTTGTTATCTTCCTTCATCTTCAAATTTGAGCATTAAATGTGAAGATAATTCAATAATTGAGCTCAAAATTTTTGGTGATAAGTCTTTGAAACCCTCCTCAAGTTTTAATGGATTTGCAATTCCAAATCAAACCCTATCCATGAATTTCTCAATTGATTCATTTTTCATCACATTGACAAAGTTTAAAACCCTAAAGGTTCTTACTTTGGTTTCATTAGGGATTTGGGGGAAACTTCCTAATAAGATTGAAGAATCTTTTACTTTGCTTCAAGTTTTGGATTTGAGTTCAAATTTCCTATTTGGTTCCATTCCACCAAAAATCTCAACAATGGTGAATCTTCAATCACTAACACTTGATGAAAATCATTTCAACACCACTTTGCCTAATTGGTTTGATTCTTTGTTTAACCTAACTTTCTTGAGTTTGAAGAAAAATCACTTCAAGGGTTCATTTCCATTTTCGCTATGCAAAATCAAGAAACTCGAAGTTATTTCTTTGTCGCAAAACGAACTGTCCGGCGAATTGCCTAGTTTCAATTCTCTTAATGGTTTACATGTTTTGGATTTGAGAGAAAACCGCTTCGAATTTGACCTACCGCGTCTGCCAAAATCCGTGGTCACGGTTTTGTTTAGCAATAACTCGTTTTCGGGAGAGATTCCTAAGAAATTCGGCGAATTGAATCATCTTCAACATTTAGACCTTTCGTCGAATCATCTTGAGGGCACGCCGCCTTCGACATTGTTCTCTCTGTCAAATTTAAGTTATTTGAATCTAGCAAACAATGTACTAAGTGGTGAGTTTTCTGAGAAACTCCATTGTGGTGGAAAACTCGGTTATGTCGATATTTCTAGCAACAAGTTAAGTGGTTTACTTCCTTCGTGTTTAGCGAATAGTTCGGATGGTAGAGTTGTTAGATATAGTAGAAATTGTTTATCTGTTGAAGCTAAGAATCAGCAGAGAGGTTCTTATTGTAAGGATTTCGGTTCGAGATGGAAGAAATTCAAGATATTGAAAGTGGTTGCATTAATGGCTATCATTTTTGGATTTGTTCTTGTGGTTTTAGTGTTTGGAGTTTTTGTGTGTAAAAAGTTTCATTTGATGAAGAAAAGTAGAAAGGAAGTGTTAGTAAAGATTGTTCAAGATAAGTCAGCAGCTGGTGTTTCATCAGAAGTTCTTGCAAATGCAAGATTTATTTCTCAAGCAGTGAAGCTAGGAACACAAACTAGTCCAACCTGTAGACAATTTTCTATCCAAGAGTTGAAGGAAGCTACCAAAAACTTTAGTTTGTTAACTTGTATTGGTGATGGCTCCATAGGAAAGCTGCATAAAGGTAAACTAGGGAGTGGATCTTATGTGGTGATAAGATCATTTGTTCTGTCAAAGAAATGCTCAATTCAAAATCTTAAAGCTAAGTTGGATTTACTCTCAAAGCTTGAACATCCGAATTTGGTTAGTCTTTTGGGTCATTGTATTGATGGTGGCGTACAAGATGATTCGAGCACACAAAAACTTTATCTTGTGTATGAATTTGTGCCGAATGGAGATTATCATACTCGTCTCTCAGAAAATTCTGCAGAGAAAGCACTTAAGTGGTCTGATAGACTAGCGATTTTGATTGGAGTTGCAAAAGCAGTTCATTTCTTACATACCGGTGTTATACCGGGATGTTTTAGCAACGGATTAAAAACAAAGAATGTGTTACTTGATGAACACTGCATTCCTAAACTAAGTGACTATGGTATGTCCATTATCAAAGAAGATATTGAAAAGTTTGAGACAAAGAGTGAGAAGAAATCAAAATCATGTCAAAGGACTAAAATGGATAATGATGTTTACAATTTCGGATTCATATTGTTGGAATCACTTGTTGGACCGATTACATGCGACAAAGGTGAAACATATTTCCTAAATGAAAAGGCATCTTTTGGAAGTGAAGATGGAAGAAGAAAGATTGTGGATCCAATAGTGTTGACAACATGTTGTCAAGAATCATTATCAATTGCAATATCTATAACAACCAAATGTATATCTCAAGAATCTTCATCTCGACCATCTTTTGAGGATGTTCTATGGAACTTACAATATGCAGCTCAAGTTCAAGCCACAGCAGATGCAGATCAAAAATCAGATTGA 2295 0.349 MRYFYFDLLILLCLLFISNSHELEQDQNQALLELRMFLEFPSSLQIMENYNVDFCYLPSSSNLSIKCEDNSIIELKIFGDKSLKPSSSFNGFAIPNQTLSMNFSIDSFFITLTKFKTLKVLTLVSLGIWGKLPNKIEESFTLLQVLDLSSNFLFGSIPPKISTMVNLQSLTLDENHFNTTLPNWFDSLFNLTFLSLKKNHFKGSFPFSLCKIKKLEVISLSQNELSGELPSFNSLNGLHVLDLRENRFEFDLPRLPKSVVTVLFSNNSFSGEIPKKFGELNHLQHLDLSSNHLEGTPPSTLFSLSNLSYLNLANNVLSGEFSEKLHCGGKLGYVDISSNKLSGLLPSCLANSSDGRVVRYSRNCLSVEAKNQQRGSYCKDFGSRWKKFKILKVVALMAIIFGFVLVVLVFGVFVCKKFHLMKKSRKEVLVKIVQDKSAAGVSSEVLANARFISQAVKLGTQTSPTCRQFSIQELKEATKNFSLLTCIGDGSIGKLHKGKLGSGSYVVIRSFVLSKKCSIQNLKAKLDLLSKLEHPNLVSLLGHCIDGGVQDDSSTQKLYLVYEFVPNGDYHTRLSENSAEKALKWSDRLAILIGVAKAVHFLHTGVIPGCFSNGLKTKNVLLDEHCIPKLSDYGMSIIKEDIEKFETKSEKKSKSCQRTKMDNDVYNFGFILLESLVGPITCDKGETYFLNEKASFGSEDGRRKIVDPIVLTTCCQESLSIAISITTKCISQESSSRPSFEDVLWNLQYAAQVQATADADQKSD* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1934 764 PANTHER OS07G0166700 PROTEIN 2 764 IPR045272 GO:0004714|GO:0006468
Psa1g1934 764 SMART LRR_typ_2 280 303 IPR003591 -
Psa1g1934 764 SMART LRR_typ_2 164 187 IPR003591 -
Psa1g1934 764 Pfam Leucine rich repeat 265 317 IPR001611 GO:0005515
Psa1g1934 764 Pfam Leucine rich repeat 143 201 IPR001611 GO:0005515
Psa1g1934 764 Gene3D Ribonuclease Inhibitor 259 372 IPR032675 -
Psa1g1934 764 Gene3D Ribonuclease Inhibitor 24 258 IPR032675 -
Psa1g1934 764 ProSiteProfiles Leucine-rich repeat profile. 282 303 IPR001611 GO:0005515
Psa1g1934 764 Gene3D Transferase(Phosphotransferase) domain 1 565 764 - -
Psa1g1934 764 PANTHER INACTIVE LRR RECEPTOR-LIKE KINASE 2 764 - -
Psa1g1934 764 SUPERFAMILY Protein kinase-like (PK-like) 461 747 IPR011009 -
Psa1g1934 764 Gene3D Phosphorylase Kinase; domain 1 440 564 - -
Psa1g1934 764 ProSiteProfiles Protein kinase domain profile. 481 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1934 764 Pfam Protein tyrosine and serine/threonine kinase 484 744 IPR001245 GO:0004672|GO:0006468
Psa1g1934 764 SUPERFAMILY L domain-like 95 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1934 Psa-Chr1 139507568 139512047 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1934 8 695 Miscellaneous Gene Families AT5G14210 52.367 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Psa1g1934 PK_Tyr_Ser-Thr 2.8e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1934 - - gmx:100799183 1054.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1934 1 139507568 139512047 Psa1g1934 1 139507568 139512047 ECH