Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1912 ATGCCCAAGGTAGACCCTCATATTAGTTCTTGCCGTGTTCAGGTATTTCCACCTGAGCCAAAGGATTCTTACATGAGAGCTTTAATTAATTTTGATGGAAGATTACATTTAGAAGCAGCTAAAGCTTTGGAAGAAATTGAAGGAAAGGTATTACCCGGATGTCTTTCATGGCAAAAGATAATGTGTGAACAGTTGTTTCATAGCTCCTTGATATTTCCTGCACCAGTGTATCACGTGATTGCGGAACAATTGGAAAAAATACTTGCAAACTTCAACAATTTAAATGGTCTTGAGTGGAACCTAAACAGAACTGCTAATGGTTCCCACCGACTGAAGATAACAGCCAATGCCACCAAGACAGTGGCAGAAGTTAGGAGACCTCTGGAAGAACTGTCGAGAGGAAAACTCATTGACCATGGAAGCCTTCCTCCCGCAGCTCTACAACTCATTTTGTCCAGAGAGGGCATTAGTCTTAAATGCTCCATACAGCAAGAGACCAAAACATACATAGTTTTTGACAGGCCCAGCCTGAACTTAAGAATTTTTGGTTCACCAGAAAAGATTGCTTTGGCTCAGCAGAAGTTAATTCAATCTCTACTCTCCCTCCATGAAGAAAAGCAGTTAGTAATCCCTCTGAGAGGGAGGGACCTACCTCCCGACTTGATGAAACAAGTGGTTAAGACTTTTGGGCCAGATCTTCAAGGGCTAAAAGAGAAGGTACCTGGGGCTGATCTCAAACTTAACACACGCCAACAGGCAATTTTTCTCAATGGTAACAAGGAGTTGAAACCAAGAGTAGAGGAAATAACTTTGGAGGTTGCGTGTTCAAGCATTCATTTAGTTGAGAGACTCGACACAGGACCTAGTTGCCCAGTTTGCTTGTGTGAGGTTGAGGATGGATATCAACTTGAAGGCTGTCGTCATTTGTTCTGCCGGTTGTGTCTGGTTGAGCAGTGTGAATCTGCTATAAGAAACCAAGGCAGTTTCCCAATATGTTGTGCTCACACGGGCTGTGGAGATCCTATTCTGCTTACAGATTTCAGAACTCTCCTGTCAAATGACAAGTTAGATGAACTTTTCAGGGCTTCTTTGCGAGCTTTTGTAGCTTCGAGTTCAGGAACTTATAGGTTTTGCCCGTCTCCCGACTGCCCCTCAATTTATCGAGTTGCAGATCCCGACACAGGTAGTGAGCCATTTACTTGCGGAGCATGTTATTCAGACACTTGTACCAAGTGCCACTTAGAGTATCATCCATTCGTTTCATGCGAGAGATACCGGGAGCTTAAAGATGACCCAGAGATCACATCTCTGAGGGAGTGGTGTAAAGGGAAAGAACAAGTCAAGAGCTGCTCTGCTTGTGGGCAAATAATTGAAAAGGTTGATGGGTGCAATCACATTGAGTGCAAGTGCGGAAAACATGTCTGCTGGGTTTGCTTGGAAATATTTTTAGAAAGTGATGAATGTTATGATCATATGAGAACTATACACTTATCCATATAA 1500 0.43 MPKVDPHISSCRVQVFPPEPKDSYMRALINFDGRLHLEAAKALEEIEGKVLPGCLSWQKIMCEQLFHSSLIFPAPVYHVIAEQLEKILANFNNLNGLEWNLNRTANGSHRLKITANATKTVAEVRRPLEELSRGKLIDHGSLPPAALQLILSREGISLKCSIQQETKTYIVFDRPSLNLRIFGSPEKIALAQQKLIQSLLSLHEEKQLVIPLRGRDLPPDLMKQVVKTFGPDLQGLKEKVPGADLKLNTRQQAIFLNGNKELKPRVEEITLEVACSSIHLVERLDTGPSCPVCLCEVEDGYQLEGCRHLFCRLCLVEQCESAIRNQGSFPICCAHTGCGDPILLTDFRTLLSNDKLDELFRASLRAFVASSSGTYRFCPSPDCPSIYRVADPDTGSEPFTCGACYSDTCTKCHLEYHPFVSCERYRELKDDPEITSLREWCKGKEQVKSCSACGQIIEKVDGCNHIECKCGKHVCWVCLEIFLESDECYDHMRTIHLSI* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1912 499 Gene3D - 420 497 - -
Psa1g1912 499 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 59 494 IPR031127 GO:0004842|GO:0016567
Psa1g1912 499 SUPERFAMILY RING/U-box 289 365 - -
Psa1g1912 499 ProSiteProfiles TRIAD supradomain profile. 286 499 IPR044066 -
Psa1g1912 499 SUPERFAMILY RING/U-box 370 427 - -
Psa1g1912 499 SMART ibrneu5 423 488 IPR002867 -
Psa1g1912 499 SMART ibrneu5 357 422 IPR002867 -
Psa1g1912 499 ProSitePatterns Zinc finger RING-type signature. 306 315 IPR017907 -
Psa1g1912 499 ProSitePatterns Zinc finger C2H2 type domain signature. 475 496 IPR013087 -
Psa1g1912 499 SUPERFAMILY RING/U-box 445 493 - -
Psa1g1912 499 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 371 IPR013083 -
Psa1g1912 499 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 59 494 - -
Psa1g1912 499 ProSiteProfiles Zinc finger RING-type profile. 290 332 IPR001841 -
Psa1g1912 499 Pfam IBR domain, a half RING-finger domain 361 422 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1912 Psa-Chr1 137442724 137445035 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1912 289 478 C3H Transcription Factor Family AT2G19610 26.341 1.09e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1912 K12818 - gmx:100806464 816.994