Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1900 ATGATGAAATTGCTTTGTTTTCATCACAAGCCTGAAATTGTTAACAAAAATTCAAGCAATCATGTTATAAGAAACTCTATCCTGATTGAAGAAAAATTGAGTGATTACGATGATGATCTCTACCAATTCTATCACCTCGAAGAGTGTCAAATTATCCCCAACTCAAAAGGGTACAAAGTGGATTGTGATATGAGAAAAAATGTGATAGATTGGTTGATATACTTACATTATTTTTTTGGACTCATATCGGAAACTCTTTATCTTAGTGTCAACATTCTTGATCGTTTTCTTTCACAAAACAATTTTGAAGTGTTATCGATGAATGAATTTAAACTCATTGGTATCGCGTCATTGTTGTTAGCTTCCAAATATGAACAAAGAAGTGTGGTCAGAGTTCGCGACATGGAACACATAGTTAAGAATTCTTATACCTCCGATGAAATACGTAAAATGGAGAATCTTATATTAAAAGAGCTCGATTGGAGTTTAACGGTTCCAACATGTTATATGTTTCTTGGTAAGAACATAAGAGTGTGTCTTTTATCTGATAGAGACAAGATCATGGAAACCATGGTGTGTTTCTTTTCTGAGCTTAGTTTGACGCATTATTCGATTATGTGTGACTATAAACCTTCTGTGATTGTTGCTTCTGCGATGTATTGTGCAAGAATTGTTATAGGAAGATATCCTCTTTGGAGCAATGATTTGAATGTTTGTTCTGGATATTCCGAAGAGAAGTTAAGGTCTTGTGCTAGGGTTATGATGAATTTATGCGATGAAATTTGTAGAGATGGAAGCATGCAAGTTTTTAAGAAATTTTCAGGTTTCTTAAGATGGAAGGTTGCGTGTATAGCTAAACAAAAATTCTTAATGAATCGTTGCAATCTTAGTGTTCATCTCAATATGTGA 909 0.3355 MMKLLCFHHKPEIVNKNSSNHVIRNSILIEEKLSDYDDDLYQFYHLEECQIIPNSKGYKVDCDMRKNVIDWLIYLHYFFGLISETLYLSVNILDRFLSQNNFEVLSMNEFKLIGIASLLLASKYEQRSVVRVRDMEHIVKNSYTSDEIRKMENLILKELDWSLTVPTCYMFLGKNIRVCLLSDRDKIMETMVCFFSELSLTHYSIMCDYKPSVIVASAMYCARIVIGRYPLWSNDLNVCSGYSEEKLRSCARVMMNLCDEICRDGSMQVFKKFSGFLRWKVACIAKQKFLMNRCNLSVHLNM* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1900 302 PIRSF Cyclin_A_B_D_E 8 298 IPR039361 -
Psa1g1900 302 Pfam Cyclin, N-terminal domain 39 163 IPR006671 -
Psa1g1900 302 SMART Cyclin_C_2 166 287 IPR004367 -
Psa1g1900 302 CDD CYCLIN 64 156 IPR013763 -
Psa1g1900 302 SUPERFAMILY Cyclin-like 165 286 IPR036915 -
Psa1g1900 302 Pfam Cyclin, C-terminal domain 166 274 IPR004367 -
Psa1g1900 302 Gene3D - 54 157 - -
Psa1g1900 302 PANTHER CYCLINS 29 288 IPR039361 -
Psa1g1900 302 CDD CYCLIN 164 255 IPR013763 -
Psa1g1900 302 ProSitePatterns Cyclins signature. 65 96 IPR006671 -
Psa1g1900 302 SMART cyclin_7 170 256 IPR013763 -
Psa1g1900 302 SMART cyclin_7 70 157 IPR013763 -
Psa1g1900 302 PANTHER CYCLIN-B1-4 29 288 - -
Psa1g1900 302 Gene3D - 158 295 - -
Psa1g1900 302 SUPERFAMILY Cyclin-like 34 163 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1900 Psa-Chr1 136465907 136466978 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1900 35 292 Core Cell Cycle Gene Families AT4G37490 35.448 3.86e-48 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1900 K21777 - gmx:547782 188.734