Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1896 ATGGATATGGGGCAGGAGAGTCCGAGCCCCAAGGATTCATCTGTTGCAGACAGTAACAAGGTCGTTGGCAAAGAGAATGATTGTCCAAGCGCAAATGCTTCTCCGATGGAAACTAATGATGAATGTCAGACCTCAAATATTTCCAATGATGACCAATTTTGTATTGACGTTGGTAGAGAACAGCTGTGTCAGAACCCCGACTCGGCCTCTATATCCGTGGCCGATACTGATGTAACAAACGAGGAGGAAACATATGTGGCACCAAATATAGACATGGAGTTTGAATCAGAAGACCATGCTTACAAGTGTTATAACAAGTATGCTATTCTGAAAGGCTTCAGCATAAGAAAGGATTTCATCAACAAGAGTCGGATAGATGGTTCTGTGGTGTCCAGAAGATTCACCTGCCATAGACAGGGTTTTCGTCCTAACAAAGATTATATAAATCCGAAGAAATTTCAACAAGAAACAAGGACCGGTTGCTTGGCACACATGACTATTTCTCGTCAAACAAATGGCAAGTTTCGTGTCACGAGTTTCGAGACCGAACACAATCATGAGTTTGTAACACCCAGTATTGCTTATATGCTGCCATCACAGAAAAAATTGAGTTTTGTTCAAGCTGTTGAAGTGAACATAACCGAGTCTAGGTTGGATGGAGTACCAAAACTAGGATTGGGATTCGATTCGGAGGAGCATGCTTATGAATTTTATAATTCATATGCTGCACAAATAGGTTTCAGTGTGAGAAAAGATTATGTAAATAGAAGTAAAGTTGATGGTGCCGTGGCATCGAGAAGATTTACTTGCTTCAGAGAAGGTTTCCGGCAGAAAGAGAAGCGAGTCACGAATATAAAGAGACCGCGGAAGGATACTAGGATTGGATGTTTAGCACAACTGATTATTTCTCGTCAGCAGGATGGCAAGTATCATATAACTCATTTTGAAGAAAAACACAATCACGAGCTTGTTGCTGCGTGTAGAGTTCATACGTTAAGATCACAGAAGAGACTAGCTGCGACTCGAGTTGAAGACAGTCTTGTACATGGATGCAACGTGCTGCCCAAGCCGGTTGAAGGTTTTCATGATCTGGATTATGATCCCGTGGATCGTGAATATCAACTACCTTTCAAATGCTTACGAGAAATAAAAGAGGAAGAAATCGAAAAGATTAGGCACTACTTTCAAAGCAAGCAATCAAAGAATCCTTCTTTCTTTTATGCTTTCCAGCTTGATTCCGAGAATCAAATAACAAATATATTTTGGGCTGATGCAAAGATGATAGTTGATTACAGTGACTTTGGTGATGTTGTTTGTTTTGATACGAGTTATAAATTTTGTAAGGACTCGCGCCCATTTGCTCCGTTTCTTGGTATAAATAATCACAGGCAAATGATTATCTTCGGGGCTGCACTTCTATACGACGAATCTGTCGAATCTTTTAAGTGGCTGTTTCATGTTTTCATCAAAGCTATGTCTGGAACCAAGCCGAAGACAATCCTAAGAGATCAAGATCCAATAATATCTGAAGCTATTAATTCCGTGTTGCCTCAAACAAATCAGCGAGTTTGTGTGTGGCATATCTACCAAGACGCCCTCAAGCGACTTAGTCATGTATCGATTAAATCCGATTCTTTCGTAAATGACTTGAGCAGCTGCTTTTTTAATCATGAGGAGGAAGAGGATTTTGTTATTGCATGGAATGCTTTCGTGGACAAGTATAATCTGTGGGAAAACGAATGGTTGCGTCAAATTTACGAAAGCAGAAACCATTGGGCCATAGCTTACGGACGGCATATTTTTTGTGCCGACATAGCAAGCTTGCTTGTGCGAGAAAATCTTACCGGAAACCTGAAAAAGCACCTCAAGAATAATGACTCAAGTGTTCTTCCATTTCTCAAGCATCTCGTGAAGATGGTGACTGAATGGCACTACAAGGAACTAGAAGCTAATTATGACACGAGCCGGCATATGCCAGCTCTAATGGGCGATATCGTTACATTAAAGCGTGCAAGAGATCCGTACACGCCAAAGATATTCGAGTTATTCCAGAAAGAATATGAAGCATGCTTAAATCTAGTGCTTAAGCATTGCAGTGAGAGTGGATCATTGTATAATTATAAAGTTAGCATATACGAACAAGTTCGAGAGTATACGGTTAGTTTCGATTCGTCTGATGAGACAATCTGTTGCAGCTGTATGAAGTTTGAGTGTGTGGGAGTCTTGTGCTGTCATGCATTAAAGGTTCTTGACCATAGGAACATAAGGATAGTTCCATCCAAATACATCTTAAAGAGATGGACAAAAGATGCTAGAGTTTGA 2322 0.4048 MDMGQESPSPKDSSVADSNKVVGKENDCPSANASPMETNDECQTSNISNDDQFCIDVGREQLCQNPDSASISVADTDVTNEEETYVAPNIDMEFESEDHAYKCYNKYAILKGFSIRKDFINKSRIDGSVVSRRFTCHRQGFRPNKDYINPKKFQQETRTGCLAHMTISRQTNGKFRVTSFETEHNHEFVTPSIAYMLPSQKKLSFVQAVEVNITESRLDGVPKLGLGFDSEEHAYEFYNSYAAQIGFSVRKDYVNRSKVDGAVASRRFTCFREGFRQKEKRVTNIKRPRKDTRIGCLAQLIISRQQDGKYHITHFEEKHNHELVAACRVHTLRSQKRLAATRVEDSLVHGCNVLPKPVEGFHDLDYDPVDREYQLPFKCLREIKEEEIEKIRHYFQSKQSKNPSFFYAFQLDSENQITNIFWADAKMIVDYSDFGDVVCFDTSYKFCKDSRPFAPFLGINNHRQMIIFGAALLYDESVESFKWLFHVFIKAMSGTKPKTILRDQDPIISEAINSVLPQTNQRVCVWHIYQDALKRLSHVSIKSDSFVNDLSSCFFNHEEEEDFVIAWNAFVDKYNLWENEWLRQIYESRNHWAIAYGRHIFCADIASLLVRENLTGNLKKHLKNNDSSVLPFLKHLVKMVTEWHYKELEANYDTSRHMPALMGDIVTLKRARDPYTPKIFELFQKEYEACLNLVLKHCSESGSLYNYKVSIYEQVREYTVSFDSSDETICCSCMKFECVGVLCCHALKVLDHRNIRIVPSKYILKRWTKDARV* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1896 773 Pfam MULE transposase domain 437 530 IPR018289 -
Psa1g1896 773 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 43 204 IPR031052 GO:0006355
Psa1g1896 773 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 214 773 IPR031052 GO:0006355
Psa1g1896 773 MobiDBLite consensus disorder prediction 1 20 - -
Psa1g1896 773 Pfam FAR1 DNA-binding domain 104 189 IPR004330 -
Psa1g1896 773 Pfam FAR1 DNA-binding domain 236 324 IPR004330 -
Psa1g1896 773 MobiDBLite consensus disorder prediction 1 43 - -
Psa1g1896 773 ProSiteProfiles Zinc finger SWIM-type profile. 718 754 IPR007527 GO:0008270
Psa1g1896 773 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-LIKE 214 773 - -
Psa1g1896 773 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-LIKE 43 204 - -
Psa1g1896 773 SMART 26again6 729 756 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1896 Psa-Chr1 136433322 136437099 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Psa1g1896 MULE 8.5e-22 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1896 K17604 - gmx:102659753 1181.39