Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1894 ATGAGAATGTCTTGTAATGGCTGCAGAGTTTTAAGAAAAGGGTGTAGTGAAGATTGTTGCATAAGACCATGTTTGGAATGGATCAAGTGTCCTAAATCACAAGCTAATGCAACTCTTTTTCTCGCTAAGTTTTATGGTCGTGCTGGTCTCACCAACCTCATCAATTCTGGTCATGAAAATCTTCGCCCAGCAATTTTTCGTTCATTGCTATATGAGGCTTGTGGGAGGATTGTGAACCCGGTTTATGGTTCTGTGGGTTTATTATGGTCTGGAAGCTGGCAGCTCTGTCAAACTGCGGTTGAAGCTGTTTTAAAAGGCGAGCCGATTACGCCGATTGCTTCAGAGTCTGCGAGTGGCCCACCGTTGAAGGCCTATGACATACGCCACGTGTCAAAAGAAGGTAATAACTCGGAGGAGACTCAGCGAGTCAAGACTCGGTCTCGGTTCAGACGAGCCGTGAAGCCGGTGCTCGGAAAAGAAACCGGATCGGCGGAGGAGGAGAACCGGTCTGAGTCGTTGCTGAGTGAACCGGGTAAAGATAATGAGAGTGGGGTTTCGGTGGAAACTTCGATCCTTTTTCAGGAAGAACCGGAGTCCGAAGCTAAGGTAAGTGACCGAGCCGAGGAAGGTGTGAGTGATGACGTTGGTTTGGAGCTTAGGCTTGGGATCGAACCGGTTGTACATGAGGAATATTTGGTTCCCATAAAGAAGAGAAAAATTGGGTTGAAGGATTGTGGTGTGCCTTGCAAAGTGGAGCTTGGGCTTGAGCTTGCGGCTTAA 780 0.4795 MRMSCNGCRVLRKGCSEDCCIRPCLEWIKCPKSQANATLFLAKFYGRAGLTNLINSGHENLRPAIFRSLLYEACGRIVNPVYGSVGLLWSGSWQLCQTAVEAVLKGEPITPIASESASGPPLKAYDIRHVSKEGNNSEETQRVKTRSRFRRAVKPVLGKETGSAEEENRSESLLSEPGKDNESGVSVETSILFQEEPESEAKVSDRAEEGVSDDVGLELRLGIEPVVHEEYLVPIKKRKIGLKDCGVPCKVELGLELAA* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1894 259 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Psa1g1894 259 MobiDBLite consensus disorder prediction 160 176 - -
Psa1g1894 259 PIRSF AS2 1 156 IPR017414 -
Psa1g1894 259 PIRSF AS2 144 259 IPR017414 -
Psa1g1894 259 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 252 - -
Psa1g1894 259 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Psa1g1894 259 MobiDBLite consensus disorder prediction 177 193 - -
Psa1g1894 259 MobiDBLite consensus disorder prediction 154 209 - -
Psa1g1894 259 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1894 Psa-Chr1 136361032 136362795 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1894 1 255 AS2 family AT3G02550 52.555 3.82e-89 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa1g1894 LOB 1.1e-24 No_clan