Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1883 ATGACTTCACTTTCTTGCTTCTTCATTCTTTTTGCTCTTTCTTTTCTTACTTCAAATTTTGTTTCATCCTCTGCAGTTCAAGATCCTGAACTAGTTGTACAAGATGTGCAAAGGAGCATCAATGCCTCTAGGAGAAACTTGGGTTATTTATCATGTGGAACAGGCAACCCAATTGATGATTGTTGGAGATGTGATCCAAATTGGCAAAACAACAGACAAAGACTAGCAGATTGTGCAATAGGATTTGGCAAAGACGCAATCGGTGGAAAAAACGGTAAAATCTACATCGTCACTGATTCAGGTGACGATGATCCAGTAAACCCTAAACCTGGAACCCTAAGACATGCCACAATTCAAGACGAACCCTTATGGATAATTTTTCAAAGAGACATGGTAATCACACTAAAACAAGAACTCTTAGTAAACTCATACAAAACAATCGATGGGCGAGGCGCGAATGTTCACATAGCAAATGGTGGATGTGTGACAATACATTATGTTAACAACGTTATAATACATGTAAACAATGATTACACACATTGGGAAATGTATGCAATTGGAGGAAGTGCAAACCCTACAATCAACAGCCAAGGAAACAGATTTCTTGCACCAAACAACAGATTTAGCAAAGAAGTAACAAAACATGAAGATGCTTCAGAAAGTGAATACAATACTTGGAATTGGAGATCAGAAGGTGATTTGTTCTTAAATGGAGCATTCTTTACACAAACTGGTGCTAGTGCTTCTTCTTCTATCTATGCTAGGGCTTCAAGTCTTAGTGCAAGACCAGCTTCTCTTGTTGACTCAATTACTTCGACTTCTGGTGTGCTTAATTGTAAGAAAGGTGCGCGTTGTTGA 858 0.3846 MTSLSCFFILFALSFLTSNFVSSSAVQDPELVVQDVQRSINASRRNLGYLSCGTGNPIDDCWRCDPNWQNNRQRLADCAIGFGKDAIGGKNGKIYIVTDSGDDDPVNPKPGTLRHATIQDEPLWIIFQRDMVITLKQELLVNSYKTIDGRGANVHIANGGCVTIHYVNNVIIHVNNDYTHWEMYAIGGSANPTINSQGNRFLAPNNRFSKEVTKHEDASESEYNTWNWRSEGDLFLNGAFFTQTGASASSSIYARASSLSARPASLVDSITSTSGVLNCKKGARC* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1883 285 PANTHER PECTATE LYASE 18-RELATED 3 173 IPR045032 GO:0030570
Psa1g1883 285 PANTHER PECTATE LYASE 18-RELATED 174 282 IPR045032 GO:0030570
Psa1g1883 285 PANTHER PECTATE LYASE 174 282 - -
Psa1g1883 285 PANTHER PECTATE LYASE 3 173 - -
Psa1g1883 285 Gene3D - 55 173 IPR012334 -
Psa1g1883 285 Gene3D - 174 278 IPR012334 -
Psa1g1883 285 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Psa1g1883 285 PRINTS Pollen allergen Amb family signature 102 127 IPR018082 -
Psa1g1883 285 PRINTS Pollen allergen Amb family signature 138 154 IPR018082 -
Psa1g1883 285 SUPERFAMILY Pectin lyase-like 56 173 IPR011050 -
Psa1g1883 285 SUPERFAMILY Pectin lyase-like 174 285 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1883 Psa-Chr1 135082498 135084586 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1883 174 285 Polysaccharide Lyase AT5G63180 72.566 1.30e-43 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1883 K01728 - gmx:100810380 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1883 1 135082498 135084586 Psa1g1883 1 135082498 135084586 ECH