Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1879 ATGGGTAAGGAAAAGGTTCACATTAACATTGTTGTCATTGGACATGTCGACTCTGGAAAATCAACCACGACTGGTCACTTGATCTACAAGCTTGGAGGTATTGACAAGCGTGTGATCGAGAGGTTTGAGAAGGAAGCTGCTGAAATGAACAAGCGTTCATTCAAGTATGCCTGGGTGCTTGACAAGCTTAAGGCCGAGCGTGAAAGAGGAATTACCATTGATATTGCCTTGTGGAAATTTGAAACCACCAAGTACTACTGCACTGTCATTGATGCTCCTGGACATCGTGACTTTATCAAGAACATGATTACTGGAACCTCCCAGGCTGATTGTGCTGTCCTTATTATTGATTCCACCACTGGTGGTTTTGAAGCCGGTATCTCTAAGGATGGGCAGACCCGTGAACATGCACTACTTGCCTTTACTCTTGGTGTGAAGCAGATGATTTGTTGTTGTAACAAGATGGATGCTACCACTCCTAAGTACTCCAAGGGCAGGTATGAGGAAATCGTGAAGGAAGTTTCTTCCTACTTGAAGAAGGTTGGTTACAACCCAGACAAAATTCCCTTCGTTCCCATCTCTGGTTTTGAGGGAGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGACCAACTCTACTTGATGCTCTTGACAACATCAATGAGCCAAAGAGACCCTCAGACAAGCCCCTCAGGCTTCCATTGCAAGATGTTTACAAGATTGGTGGTATTGGAACTGTGCCAGTGGGACGTGTTGAAACTGGTGTTGTGAAGCCCGGTATGCTTGTGACTTTTGCTCCTACTGGTTGGTTAAGTTCGTTGAGATTGCACCACGAGCTCTCACCGAGGCTCTTCCAGGAGACAATGTCGGATTCAATGTTAAGAATGTTGCAGTGA 906 0.4558 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKGRYEEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVVKPGMLVTFAPTGWLSSLRLHHELSPRLFQETMSDSMLRMLQ* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1879 301 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Psa1g1879 301 PANTHER TRANSLATION FACTOR 1 282 - -
Psa1g1879 301 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Psa1g1879 301 Gene3D Translation factors 229 287 - -
Psa1g1879 301 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Psa1g1879 301 CDD EF1_alpha 9 227 - -
Psa1g1879 301 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 282 - -
Psa1g1879 301 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Psa1g1879 301 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Psa1g1879 301 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Psa1g1879 301 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Psa1g1879 301 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Psa1g1879 301 Gene3D - 1 226 IPR027417 -
Psa1g1879 301 Pfam Elongation factor Tu GTP binding domain 6 222 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1879 Psa-Chr1 134955857 134959238 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1879 1 282 Eukaryotic Initiation Factors Gene Family AT5G60390 93.684 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1879 K03231 - gmx:100801611 553.132