Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1878 ATGGGAAAGGAAAAGGTTCATATCAACATTGTCGTCATTGGACATGTCGACTCAGGAAAATCAACCACCACTGGTCACTTGATCTACAAGCTAGGAGGTATTGACAAGCGTGTGATTGAGAGATTTGAGAAGGAAGCAGCTGAGATGAACAAGCGTTCATTCAAGTATGCATGGGTTCTTGACAAGCTTAAGGCTGAGCGTGAAAGAGGTATCACCATTGATATTGCCTTGTGGAAATTTGAGACCACCAAGTACTACTGCACAGTCATTGATGCTCCTGGACATCGTGACTTTATCAAGAACATGATTACTGGAACCTCCCAGGCCGATTGTGCTGTCCTTATCATTGATTCCACCACTGGTGGTTTTGAGGCTGGTATCTCTAAGGATGGACAGACCCGTGAGCATGCTCTTCTTGCTTTTACTCTTGGAGTGAAGCAGATGATCTGTTGTTGTAACAAGATGGATGCTACCACCCCTAAGTACTCCAAGGGCAGGTATGAGGAAATTGTGAAGGAAGTTTCTTCCTACTTGAAGAAGGTTGGTTACAACCCAGACAAAATTCCTTTCGTTCCCATCTCTGGTTTTGAGGGAGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGACCAACTCTACTTGATGCTCTTGACAACATCAATGAGCCAAAGAGACCCTCGGACAAGCCCCTCAGGCTTCCATTGCAAGATGTTTACAAGATTGGTGGTATTGGAACTGTGCCAGTGGGACGTGTTGAAACTGGTGTTGTGAAGCCCGGTATGCTTGTGACTTTTGCTCCTACTGGTTTTGACAACTGA 828 0.4541 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKGRYEEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVVKPGMLVTFAPTGFDN* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1878 275 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Psa1g1878 275 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Psa1g1878 275 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Psa1g1878 275 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Psa1g1878 275 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Psa1g1878 275 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Psa1g1878 275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Psa1g1878 275 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Psa1g1878 275 CDD EF1_alpha 9 227 - -
Psa1g1878 275 Gene3D Translation factors 229 275 - -
Psa1g1878 275 Gene3D - 1 226 IPR027417 -
Psa1g1878 275 Pfam Elongation factor Tu GTP binding domain 6 222 IPR000795 GO:0003924|GO:0005525
Psa1g1878 275 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 273 - -
Psa1g1878 275 PANTHER TRANSLATION FACTOR 1 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1878 Psa-Chr1 134908265 134911588 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1878 1 273 Eukaryotic Initiation Factors Gene Family AT5G60390 96.337 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1878 K03231 - gmx:100801611 548.125