Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1868 ATGAATAATTCTGGGAAAGAAAAGGCATTGAATCTTAACACTAAGAACAAGCTTTATCTCCAATCTAATGCCTCCAAAGCTCCACCATCTCCCAAACAACCTTTCTTCATTGGTGTTGCTGGTGGAACTGCATCCGGAAAAACAACTGTATGCAACTTGATAAACAGCCAGCTTCATGATCAACGTATTGTCCTCATTAATCAAGACTCATTTTACCACTCATTGAGTGATGATATACTACGAAATGTTAATGATTATAACTTTGATCATCCTGATGCATTCGATATAGAGCTTATGCTTTCTAGTATGGAGAAATTAAAACATGGACAAACAGCTTCCATACCGAATTATAATATCACTAGTCGTAAGAGAATCGAACCTCCACGTCAGGTTCACCCTGCGGACATCATAGTTTTAGAAGGAATATTAGTTCTTCACGATTCTCGTGTTCGCGATCTTTTGAACATGAAGATCTTTGTTGACGAAGATTCTGATATTCGACTGGCGCGAAGGATTCAACGCCTCGCCATTGAACATGGGAGAGACATTCAAAATGTTCTAGACCAATATTGCAGATTTGTAAAACCTAGTTTTGAAGATTTTGTTCTTCCAGCAAAAAAATATGCTGATATTATCATACCTGGTGGAGGAGATAATGATGTTGCTATTGATTTGATAATTCAAAATATTCGTACAAAGCTTGGCCAACATGATTTGTGTAAAATATATCCAAATATTTTTGTCATTTGTTCTACTTTTCAGATAAAAGGAATGCATACTCTAATCCGTGACATTGGAACTACAAAACATGATTTTGTATTTTATTCAGATCGTCTTATTAGATTGGTTGTTGAACATGGACTTGGTCACCTTCCTTTTACAGAAAAACAAGTCACAACACCTACAGGATCTGTATACTCTGGTGTGATTTTTTGTAGCAGATTATGTGGAGTATCGGTTATTAGAAGTGGAGAAAGCATGGAAAATGCATTGAGAGCATGTTGTAAAGGAATCAAAATTGGTAAAATACTTATTCTTGGACAAGGCACAGATGGAAGACAGTTAATCTATGAGAAGCTACCATCAGATATTGCAAGTCGTCATGTGTTGCTACTTGATCCTGTTCTAGCTACAGGAAGTTCTGCAGTCAAAGCTATCTCTCTACTTCTGAAGAAAGGTGTATTAGAATCAAACATCATCTTTCTAAATTTAATAGCAGCACCACAAGGAATAAATGCAGTTTGCGAGAGATTTCCAATGATGAAACTTGTAACATCAGAGATTGATGCAAGCCTAAATGAAAGTTCTCGTGTGATCCCTGGATTAGGCGAGTTTGGTGATCGTTATTTCGCCACAGATGATTAG 1365 0.367 MNNSGKEKALNLNTKNKLYLQSNASKAPPSPKQPFFIGVAGGTASGKTTVCNLINSQLHDQRIVLINQDSFYHSLSDDILRNVNDYNFDHPDAFDIELMLSSMEKLKHGQTASIPNYNITSRKRIEPPRQVHPADIIVLEGILVLHDSRVRDLLNMKIFVDEDSDIRLARRIQRLAIEHGRDIQNVLDQYCRFVKPSFEDFVLPAKKYADIIIPGGGDNDVAIDLIIQNIRTKLGQHDLCKIYPNIFVICSTFQIKGMHTLIRDIGTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVTTPTGSVYSGVIFCSRLCGVSVIRSGESMENALRACCKGIKIGKILILGQGTDGRQLIYEKLPSDIASRHVLLLDPVLATGSSAVKAISLLLKKGVLESNIIFLNLIAAPQGINAVCERFPMMKLVTSEIDASLNESSRVIPGLGEFGDRYFATDD* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1868 454 Pfam Uracil phosphoribosyltransferase 251 452 - -
Psa1g1868 454 Gene3D - 237 452 IPR029057 -
Psa1g1868 454 Gene3D - 30 236 IPR027417 -
Psa1g1868 454 PANTHER URIDINE KINASE-LIKE PROTEIN 5 16 450 - -
Psa1g1868 454 PANTHER URIDINE KINASE 16 450 - -
Psa1g1868 454 TIGRFAM udk: uridine kinase 35 233 IPR000764 -
Psa1g1868 454 CDD UMPK 36 233 IPR000764 -
Psa1g1868 454 Pfam Phosphoribulokinase / Uridine kinase family 36 222 IPR006083 GO:0005524|GO:0016301
Psa1g1868 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 226 IPR027417 -
Psa1g1868 454 PRINTS Uridine kinase signature 34 51 - -
Psa1g1868 454 PRINTS Uridine kinase signature 64 75 - -
Psa1g1868 454 PRINTS Uridine kinase signature 109 124 - -
Psa1g1868 454 PRINTS Uridine kinase signature 165 175 - -
Psa1g1868 454 PRINTS Uridine kinase signature 179 190 - -
Psa1g1868 454 PRINTS Uridine kinase signature 201 214 - -
Psa1g1868 454 SUPERFAMILY PRTase-like 236 452 IPR029057 -
Psa1g1868 454 CDD PRTases_typeI 315 425 IPR000836 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1868 Psa-Chr1 134583157 134588804 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1868 33 454 PRT Gene Family AT1G55810 73.286 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1868 K00876 - pop:7461316 674.47