Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1864 ATGGGGCGTGGAAGAATAACTATGGAACTCATTCAAAATGAGAAAGCTAGAAAGACAACATTTCAAAAGAGGAAAAATGGATTAATGAAAAAAGTGAATGAATTCTCCATTCTTTGTGATGTTGATGTATGTGTCATTCTCTATGCTCCAAACTTTGAAGGTCAAGGATATCTTGAACCTGAAACATGGCCTAAAGATCCGAAAGAGGTTCAGAGAATTCTTAAAAAATACTATAACACAACGAATGATAGACGTCCTAAAATTTATGATGTTCATGAATATTACAAAGAGAGAGTGAAAAAAGTTGAATTCGAGATTTCCAAAGTGCGGAAAGATAGGTTAAAGATCAAATATCCAACTTGGGATGAGTCTTTCAATTCTATTGGAGCCGAAAATTTGAGGATGTTTGCTAGCACATTGGATGCTAAGCTTGATGTTTGTAATCAAAGGATGAATATGTTAAAAGGAGATTTTAAGGAGAAAGCAATAGCTCAAGAATCACATAATGTTGATCAACTTATGAATTCTTCTTACATTGCTTCAAATCCAAGTAACTACTATAATCTCATCCAAAACATGTCTCAACCACAAATTTATCCGACTTTGACCAATATTAGTGATAAAAACCTAAACTCCTTAGGTTTTTGGTTTCAACCCGGACAAAGCTCGCAACCTTCTTCTATGATTACCAACACACAAGGTAACTCGTATCAGGTCGAGGAGGGTCGATACGTGCAACCTCATCCATATAAGCAAATTGATGCTAATTGGGGCAATCAAGGCAATGTTAATGTTACTTATGATCCAAGCATCACGATGAAGAATGATGAAGTTGAAAATAATGAAAACATGTTACCATACTATTACAATGGAAATGCAATGCAATCATATCCTATTGCCATGCATAATCTTCCTTATCAGAATCATCCAAACCTACCTCATGGATATCATCAACTTAATGGATTCTATGATATGGATTTTCTTCAAGGTCATCATATGATCAACTATATGGATGGAAGGAAGTAG 1026 0.348 MGRGRITMELIQNEKARKTTFQKRKNGLMKKVNEFSILCDVDVCVILYAPNFEGQGYLEPETWPKDPKEVQRILKKYYNTTNDRRPKIYDVHEYYKERVKKVEFEISKVRKDRLKIKYPTWDESFNSIGAENLRMFASTLDAKLDVCNQRMNMLKGDFKEKAIAQESHNVDQLMNSSYIASNPSNYYNLIQNMSQPQIYPTLTNISDKNLNSLGFWFQPGQSSQPSSMITNTQGNSYQVEEGRYVQPHPYKQIDANWGNQGNVNVTYDPSITMKNDEVENNENMLPYYYNGNAMQSYPIAMHNLPYQNHPNLPHGYHQLNGFYDMDFLQGHHMINYMDGRK* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1864 341 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 3 248 - -
Psa1g1864 341 SUPERFAMILY SRF-like 2 97 IPR036879 GO:0003677|GO:0046983
Psa1g1864 341 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa1g1864 341 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Psa1g1864 341 PANTHER MADS BOX PROTEIN 3 248 - -
Psa1g1864 341 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Psa1g1864 341 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Psa1g1864 341 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa1g1864 341 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa1g1864 341 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa1g1864 341 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1864 Psa-Chr1 134474759 134475784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1864 1 133 Type I MADS-box Gene Family AT5G55690 43.284 3.13e-28 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Psa1g1864 SRF-TF 1.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1864 - - mtr:MTR_1g114730 429.869