Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1859 ATGGTGATGGCTGCTGCGATGCAACGCGAAGGGAAGCGTTTGGCTCCTTTCATGTCTTCCCAACCAAAATCAACAACACTCTCTGATCCACCCTCATCTCTCCCTGTTCAAACTAGGGCTGAAAATTCATGTGGCTTGTGGCAGCCATTTACAGCTCTTCTCGGCGATGCTATAAGTGTTGATGTCAAGAAGAATGTTGTTATTACCATTTCTTCATATAAAGGTCTTTGTGGTGGAATCAACTCCACCTCTGTAAAGATAAGCAGAGTGTTGAGCAAGTTGAATTCTGAACCTGATAAAGAGACCAAGTACGTCATATTGGGAGAGAAGGCTAAGGCTCAGTTGATTTGTGACTCAAAGAAAGACGTTGCACTCAGCTTGACTGACCTACAAAAGAATCCTCTGAATTATACTCAGGTGTCTGTCTTGGCTGATGACATTTTAAAGAATGTGGGATATGATGCACTTAGGATTGTTTTCAATAAGTTTCAGTCGGTTGTGCAATTTATACCAACAGTGTCAACTGTACTGTCCCCTGAGATTGTTGAAAGAGAGGCTGAAGCTGGTGGAACACTCGGTGAACTGGATTCCTATGAGATTGAAGGGGGTGAGACAAAATCAGAAGTTCTCCAAAATCTGTCAGAGTTCCAGTTTTCTTATGTCATGTCCAATGTAGTGCTAGATAATGCCTGCAGTGAGCAAGGAGCAAGGATGTCTGCCATGGATAGCTCTAGCAGGAATGCTAGGGATATGCTTGATCGTCTGACCCTCACTGATAACAGAACTCGTCAAGCATCAATCACCACCAAATTGATTGAGATTATCTCTGGAGCATCAGCACTGACTG 847 0.4345 MVMAAAMQREGKRLAPFMSSQPKSTTLSDPPSSLPVQTRAENSCGLWQPFTALLGDAISVDVKKNVVITISSYKGLCGGINSTSVKISRVLSKLNSEPDKETKYVILGEKAKAQLICDSKKDVALSLTDLQKNPLNYTQVSVLADDILKNVGYDALRIVFNKFQSVVQFIPTVSTVLSPEIVEREAEAGGTLGELDSYEIEGGETKSEVLQNLSEFQFSYVMSNVVLDNACSEQGARMSAMDSSSRNARDMLDRLTLTDNRTRQASITTKLIEIISGASALT 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1859 282 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 59 281 IPR000131 GO:0015986|GO:0045261|GO:0046933
Psa1g1859 282 MobiDBLite consensus disorder prediction 8 34 - -
Psa1g1859 282 MobiDBLite consensus disorder prediction 18 34 - -
Psa1g1859 282 CDD F1-ATPase_gamma 37 278 IPR000131 GO:0015986|GO:0045261|GO:0046933
Psa1g1859 282 PANTHER BNAA05G10580D PROTEIN 36 281 - -
Psa1g1859 282 Pfam ATP synthase 56 281 IPR000131 GO:0015986|GO:0045261|GO:0046933
Psa1g1859 282 PRINTS ATP synthase gamma subunit signature 62 81 IPR000131 GO:0015986|GO:0045261|GO:0046933
Psa1g1859 282 PRINTS ATP synthase gamma subunit signature 154 171 IPR000131 GO:0015986|GO:0045261|GO:0046933
Psa1g1859 282 PRINTS ATP synthase gamma subunit signature 228 247 IPR000131 GO:0015986|GO:0045261|GO:0046933
Psa1g1859 282 PRINTS ATP synthase gamma subunit signature 259 280 IPR000131 GO:0015986|GO:0045261|GO:0046933
Psa1g1859 282 PANTHER ATP SYNTHASE GAMMA CHAIN 36 281 IPR000131 GO:0015986|GO:0045261|GO:0046933
Psa1g1859 282 Gene3D - 58 184 - -
Psa1g1859 282 Gene3D ATP synthase, gamma subunit, helix hairpin domain 185 281 - -
Psa1g1859 282 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 59 281 IPR035968 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1859 Psa-Chr1 133849908 133850885 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1859 62 281 Primary Pumps ATPases AT1G15700 25.100 2.54e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1859 K02136 - gmx:100813657 412.535