Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1845 ATGGGAAGTATTGGGGCATTACATGCTTTTACTTCACGAGATGATGTTGATTTTGAGTGTATTTTATATGGAACTGTTATGGGAAGTATTGGGGCATTACATGCTTTTACTTCACGAGATGATGTTGATTTCTTTTCTCATTTGGAGATGCATATGAGGCAAGATAATCCACCTTTGTGCGAAAGAGACCACATGGCGTATAGATCTGCCTATTTTCCTGTTAAGGATGTTATTGATGGGGACCTATGTGAGAAATACCCAACATTGCCAATGGATTTGCAGCGAAAAATTGCGGATGAATTGGACAGGACCCCTGGAGAAATTCTGAAGCAACTCTGGAAGATATTGCTCATAATTCAAATTCAACTTTCACAGAGCAGAATCAAACAAAGATGCGTTTCAAGCCTGAGGAAGAAAGACGCGTTTATCAACGTGTCTTATGATCAGATAGGGGAAACTCAAGAAAAAGAAAGTAGCATGAAAAAACTGAAGATTTTCGTATGGACAGATACTTTGAAGATGATTGAGGATTGGGTAAGTAGTCTACAGCAATGTGCACCACCTCTAGAGGATATAACTGAATTGCCTGAACCTGTGCATCCTATAGTTGATGTTAACACTGAAATTGCCGTGACTCCTTCTGTTGTGGACCATAAGATCTCTCCAGGAATGGAAGTTGCTAAAAGATATATTTCGTCTTTAACTGCCAATGCCTCTGCAGCTCAGCTGGCAAATCATGGGTGGGTTGTAATCCCCTTTTTGAGTGCATTTGTGAGTTTGAAGGTGCTCAATTTGTCTGGAAACGGGATCGTGAAGATAACTGCCGACCTCAGCTTCAATCGCATACTAAGAAATGCAGATTTTAACAATCCTGCAAATGTGATATGCTCTCTGAGCTTTGATCGGGATGAAGATTACTTTGCTTCTGCTGGGATATCTAAGAAAATAAAAATCTTTGACTTCAATACACTAAATGTGATATGCTCTCTGAGCTTTGATCGGGATGAAGATTACTTTGCTTCTGCTGGGATATCTAAGAAAATAAAAATCTTTGACTTCAATACACTTTGCAATGATTCTGTCGATATCCATTATCCTACAGTTGAGATGTCAAACAGATCAAAGCTCAGATCTGTTTGCTGGAATAACTATATTAAGAATTATCTTACCTCTACAAACTACGACGGTGTAGTGAAGTTATGGGATGCTAGTACAGGTCAAGAATTTTCTCAGTACAGTGAACATGAAAAGAGGGCTTGGTCTGTTGATTTTTCTCCAGTATGTCCTACAAAATTTGCCAGTGGAAGTGATGATTGTACTGTCAAGCTGTGGAGCATCACTTTTGGATCTGCAAATTATTCAACTTACTGTTACGATCTTCGCAATCTTAGAGGTCCCTGGTGTGTACTGGTTGGCCACCGTAAAGCTTTTGCAGCCGCATCAGTATCAGCAGTAGTGGATGTCCATGCAGTATCCTACTACTGCTATGGCTATGATGCAGCAGCAGATGACGATGTATCCACAACATTACATGTTGTGTGTTCATCCTCATCATTATCAGGCGCCGCCTCATTAACATTAACCGTCAGCCGGTTGCAGCACAAAAGCACAAGAGAGCCCGCACGCACAGCATACTGCAAGGAGTTAAACTCCTTATCCAAGGCAGGATTACCTCCCCTATTTAATGTTCTTCTTGTGTGTTATTCACTTTTCGAACGGCACAACCCACAGCAGAAGGATGACCGTAAAATTTTGAAGCGTTGGAAGTGGAGTTGTGTACTGATGGATGAGGCACATGCTTTAAAGGACAAAAATAGCTTTAGGTGGAAAAATCTGATGTCTGTTGCTCGAAATGCAATCCAACGCTTGATGCTGGAAGGGACACCTCTTCAAAATGACCTACATGAGTTATGGTCTATGTTGGAGTTTATGATGCCTGATGTTTTTGCTTCTGAAGATGTTGATTTAAAAAAGTTGCTAAGTGCTGAAGATACAGATTTAATAAGTCGTATGAAGTCTATCTTAGAGCCATTTATTTTGCGGCGTCTGAAATCTGATGTAATGCAGCAGCTTATTCAAAAAACACAGAAGGTTGAATATGTCATGATGGTAGAGCAACAGGAACATGCATATAGGGAAGCCATTGAGGAGTATCGGACTGTTTCACAAGCTCGGTTAACAAAATGTTCTGATCTGAACTCATAA 2205 0.4036 MGSIGALHAFTSRDDVDFECILYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQDNPPLCERDHMAYRSAYFPVKDVIDGDLCEKYPTLPMDLQRKIADELDRTPGEILKQLWKILLIIQIQLSQSRIKQRCVSSLRKKDAFINVSYDQIGETQEKESSMKKLKIFVWTDTLKMIEDWVSSLQQCAPPLEDITELPEPVHPIVDVNTEIAVTPSVVDHKISPGMEVAKRYISSLTANASAAQLANHGWVVIPFLSAFVSLKVLNLSGNGIVKITADLSFNRILRNADFNNPANVICSLSFDRDEDYFASAGISKKIKIFDFNTLNVICSLSFDRDEDYFASAGISKKIKIFDFNTLCNDSVDIHYPTVEMSNRSKLRSVCWNNYIKNYLTSTNYDGVVKLWDASTGQEFSQYSEHEKRAWSVDFSPVCPTKFASGSDDCTVKLWSITFGSANYSTYCYDLRNLRGPWCVLVGHRKAFAAASVSAVVDVHAVSYYCYGYDAAADDDVSTTLHVVCSSSSLSGAASLTLTVSRLQHKSTREPARTAYCKELNSLSKAGLPPLFNVLLVCYSLFERHNPQQKDDRKILKRWKWSCVLMDEAHALKDKNSFRWKNLMSVARNAIQRLMLEGTPLQNDLHELWSMLEFMMPDVFASEDVDLKKLLSAEDTDLISRMKSILEPFILRRLKSDVMQQLIQKTQKVEYVMMVEQQEHAYREAIEEYRTVSQARLTKCSDLNS* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1845 734 ProSiteProfiles Trp-Asp (WD) repeats profile. 412 454 IPR001680 GO:0005515
Psa1g1845 734 PANTHER PROTEIN SPA1-RELATED 2 278 324 IPR044630 GO:0009640
Psa1g1845 734 PANTHER PROTEIN SPA1-RELATED 2 323 476 IPR044630 GO:0009640
Psa1g1845 734 ProSiteProfiles Trp-Asp (WD) repeats profile. 369 411 IPR001680 GO:0005515
Psa1g1845 734 Gene3D - 511 707 IPR038718 -
Psa1g1845 734 ProSiteProfiles Leucine-rich repeat profile. 259 280 IPR001611 GO:0005515
Psa1g1845 734 ProSitePatterns Trp-Asp (WD) repeats signature. 389 403 IPR019775 -
Psa1g1845 734 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 561 647 IPR014001 -
Psa1g1845 734 Pfam CPSF A subunit region 19 86 IPR004871 GO:0003676|GO:0005634
Psa1g1845 734 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 412 446 - -
Psa1g1845 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 561 690 IPR027417 -
Psa1g1845 734 Pfam WD domain, G-beta repeat 407 445 IPR001680 GO:0005515
Psa1g1845 734 SMART WD40_4 363 402 IPR001680 GO:0005515
Psa1g1845 734 SMART WD40_4 281 320 IPR001680 GO:0005515
Psa1g1845 734 SMART WD40_4 321 352 IPR001680 GO:0005515
Psa1g1845 734 SMART WD40_4 405 445 IPR001680 GO:0005515
Psa1g1845 734 Pfam SNF2-related domain 555 717 IPR000330 GO:0005524|GO:0140658
Psa1g1845 734 SUPERFAMILY WD40 repeat-like 288 474 IPR036322 GO:0005515
Psa1g1845 734 Gene3D - 271 323 IPR015943 GO:0005515
Psa1g1845 734 Gene3D - 324 447 IPR015943 GO:0005515
Psa1g1845 734 PANTHER PROTEIN SPA1-RELATED 2 323 476 - -
Psa1g1845 734 PANTHER PROTEIN SPA1-RELATED 2 278 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1845 Psa-Chr1 133093783 133096494 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1845 295 455 Miscellaneous Gene Families AT5G08390 29.775 1.80e-09 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa1g1845 SNF2_N 5.1e-29 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1845 K14439 - gmx:100806323 339.732