Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1840 ATGAGTGATGATGTTAGTGTGAATGGTTCTTCATGTTTAGCAATAACAGAGAAGAAGAAGAACAATGAAAAACAAAGTGGTGGTTGTGTTGGTATTTTCTTTCAATTGTTTGATTGGAATAGAAGATTCACCAAAAAGAGATTTTTCTCCAAGAAACTTCTTCCTCCTGCTGGTGCAAAACAAGATTCTATGAACAAGTTTAAAGGAGATGACAAAATGCCTAATTCCAAGCTTCATTTGATTGCTAATGGGAACAATGGAGGTTTCTCAAATGCCATGGAAGGAGGAAATTGTGTTATAGAGGTAGAGCGAAAACATGAAATGAAAGCTCCGAGTATTGTAGCTAGGTTGATGGGTCTAGAATCAATTCCGGCTTCAAAGAGAGATCATAAGTCCACGAAATCTTCATTTTTTGATAGTGATGATGGTGAAGAGTCTTTGGAAATCGGAGTTGCGAATGCATGTCATGATTCAAGGCCTCAGAAGGTAAGGAAAACCGGAGCGAATGAAAGAAGAGCCATGACTAGGTTTGGTGCCGAGGCATTGCAAATCAAGAATGTTTTGTCACAAGTGAGAAAGTCTAATCATCATCATGATAACCATCGCGCTAAATTTGTTTCGCCTTTGAAGAGTCCGAGAGTTTCTTCGGGAAAGAGTGCATCTCGAAGCTCAAGGTTGATAGAAGCAGCTACTAAGATCTTGGAACCTGGCCTGCAGGCTACAAGCAGATCCAAATACTCTCTTACTTGTCCTCGTAAGAATGGCATTGTCACGGATACGGTCGGAACTCGGGCGGAAGCTATACCCAACCGATCGTGTTATAATGTTGGCATAGACAAGTCATTGGTGGAGCATACTTGCAAAAATTGCGGTAATTTGCTTGACGTCGAGATCAGCCAACCTATTGTTTCAGATGTTTTCCCCGGCTTCTCTTCCGAATCAGTGCAAAAAGGAAGATCATTCAATCCTTCTCACGAAAACGATGTAGTTCTTCTCAGAAGTCGAGAGAAGATCATAACTCTTGTTGATGAAGATGTTAAAAAGAATGCTTATTCTTGTAATGAATCTACTTCGAAAAGAATCCACGATCATGCAAAATGTGATTCATCACGTCAACCGCCCGGAGGCTTAGAGGATAACGACTACACATCATCTTTTAACTTCGAATGCAAAACTCAAACACGAGATCGAATGTTAAGTGCTGAAAGAATGGCTTTTAGATTTGAAGCTAGAAATAGTAATATGCAAGTGAAGAGAGCTTCATCAGCTGCAACTGCAAGCACTGTGAGTGGAAGTAAAGACTTTGTTGGTTTGAATCGAAGCCTAAGTGGTCGAACTCGGATAAGGTCTCCCACCAAGTTGGACAGTTGCAAATTTGATCTTGACAGGAAAAAAAGGACCTTAAATATCTCACAAGTTGGAGGTATAGCTTCTGTCAATTTGGTTACATCGAAACAGAGAAATGTTGGTTCAAAAGCGCAAGGAGGAAAAAGGAGAAACTTCGAAGCTTTCTCTCCAAACAGTTCTAATGTCAAATGTAGAAAAAGTGGTTATCAAAAAATCGATAAAACTAACGACAATAAGATCAATAAGGTAGAGACAAGAAGTGCTAATGAGATTAAGACTTGTTTCCAAAGACATCATTCACCCTTGAGAGAAGATGTTTTAGGTGCTTTTCTAGAACAGAAGTTGAAAGAATTGAAATCCAGAGAAAATGAGAAGTTGGCTAATGGTGATCCACCTAGAAGATCAACTGCGTTGATTCTTCAAGAATTGATATCTGTTCTGAATGCAGGCTCAGGGTATGGTTTTCACACCGGGTCTATAAATTGTTCATACGATCAACCAGAACGATTTGAACACGACGTCAAACTTTTAGATTCTGCAACATTATTTAACACAGGGAAGATAGGTTGTAAGATATTGACAGAACTCGATAACCGAATTCATTCAATATTGCTAAGCTTAAATTCTTTTTGGCCAAGATTGACAAAAAACAAGCTCAGTCATATGAAGGAAATTATCTTCATGGCTGAATTGGTTCTTGGAAATGTCACCAGGCAAAGTGAGGATCTACCACAGCTTCTCGTTTCTTGCATTCTTGTTGATGAACTCGAAAACATGGCAAGTGATGCTATGCGGAGAAATTTTAACCGAAGCCAACTTAAGGGATTTCTATTTGATTGTGTAATTGAATATCTAGAATCAAACTGCTGTCATAATTTTTACAGAGTATTTAGTTTATGGTGTGCATGGACAAAGGTTCCTTTATGCATGAAAGGTGAGATTTTGGTTGAAGAGGTGAAGAGTGAGATTAAGAAGTGGGAGTTTATAGCTGGAATGGAACCGGACGAAATAATTGATTGGGAGATGAGTTACTCATTGGGAAAATGGACTGATTTCAATGTTGAAGCTTTCGAGTTTGGTGTCGATATTGAGGATTATGTGCTTCAAATTTTGGTTGATGAACTTGTTGAAGACTTTGTAGGTTTTAGGCAGGGCACTTTTTGA 2511 0.3887 MSDDVSVNGSSCLAITEKKKNNEKQSGGCVGIFFQLFDWNRRFTKKRFFSKKLLPPAGAKQDSMNKFKGDDKMPNSKLHLIANGNNGGFSNAMEGGNCVIEVERKHEMKAPSIVARLMGLESIPASKRDHKSTKSSFFDSDDGEESLEIGVANACHDSRPQKVRKTGANERRAMTRFGAEALQIKNVLSQVRKSNHHHDNHRAKFVSPLKSPRVSSGKSASRSSRLIEAATKILEPGLQATSRSKYSLTCPRKNGIVTDTVGTRAEAIPNRSCYNVGIDKSLVEHTCKNCGNLLDVEISQPIVSDVFPGFSSESVQKGRSFNPSHENDVVLLRSREKIITLVDEDVKKNAYSCNESTSKRIHDHAKCDSSRQPPGGLEDNDYTSSFNFECKTQTRDRMLSAERMAFRFEARNSNMQVKRASSAATASTVSGSKDFVGLNRSLSGRTRIRSPTKLDSCKFDLDRKKRTLNISQVGGIASVNLVTSKQRNVGSKAQGGKRRNFEAFSPNSSNVKCRKSGYQKIDKTNDNKINKVETRSANEIKTCFQRHHSPLREDVLGAFLEQKLKELKSRENEKLANGDPPRRSTALILQELISVLNAGSGYGFHTGSINCSYDQPERFEHDVKLLDSATLFNTGKIGCKILTELDNRIHSILLSLNSFWPRLTKNKLSHMKEIIFMAELVLGNVTRQSEDLPQLLVSCILVDELENMASDAMRRNFNRSQLKGFLFDCVIEYLESNCCHNFYRVFSLWCAWTKVPLCMKGEILVEEVKSEIKKWEFIAGMEPDEIIDWEMSYSLGKWTDFNVEAFEFGVDIEDYVLQILVDELVEDFVGFRQGTF* 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1840 836 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 12 830 - -
Psa1g1840 836 PANTHER DNAA INITIATOR-ASSOCIATING PROTEIN 12 830 - -
Psa1g1840 836 Pfam DUF761-associated sequence motif 103 129 IPR032795 -
Psa1g1840 836 Pfam Domain of unknown function (DUF4378) 670 823 IPR025486 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1840 Psa-Chr1 132758304 132762302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1840 1 828 TRM (TON1 Recruiting Motif) Superfamily AT1G67040 30.862 3.21e-79 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1840 - - cam:101506047 955.666