Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1820 ATGATGTCCGAAGACAAGGAAGAAAATGTAATCTTCAATATTTTAAAGAATGGAGCAACACATTTCATTGCAAAACCTTTTTGTGATGAAGACTTCAAAAACATTTGGAAATATGTCATGGAAGCAAAAGAAGAAAAACAATTCTTTGAAAGCCTATTTTCAACAAGTGAAGAACAAAAGAGTAAAAATAACCAATCCAAGAGAAAGATAAATAACAAAGATCAAGTAGAAGGAGAAGGAGATTTTCAAGTTGCTAAGAAAACAAAGCTTGTTTGGACTCCTGAACTTCATAATCTATTTATGTTTGCAATTAAGCAAATTGGATTGGAAAAGGTTGTTCCAAAGAAAATTCTGAAGATCATGAATGTACCAAATTTAACCAGGGAAAATGTAGCTAGCCACTTACAGAAATATCGCAAGTTTCTTCGTGATATTGATGAGAAAGGAATGACAGGAGGAATATCACAAAGAGTGTTAAGATTTTATCCGGAAAAAGACCTATTATATGATGGTAGCTCTAGTTCTATTAGCTTTTCCTCATATGGAGAGGGACAAGGATGGATGAGTTCTCCTACAACTTCTTCTTCAAGTTTCTTAACAAGAGACTTGAACTTCAATGACATGAATCTTGTTAATAAGTTATCGAAAGGTGGTGATGAAATTGAAATCGCTCCTCAAACTGAAAACATGTCAATAAATTCTAACGAAAGTTCTAAAAAGTTGCAAGGAAATAATGGATTTTCAAAGGAAGGATCTTCTAAAGAAAGTACCTCTACTAATGATCTGGAATTTGATATGGATGTTATTGAAGCCTTGTTTGGTACTATAGAAGACTAG 837 0.3286 MMSEDKEENVIFNILKNGATHFIAKPFCDEDFKNIWKYVMEAKEEKQFFESLFSTSEEQKSKNNQSKRKINNKDQVEGEGDFQVAKKTKLVWTPELHNLFMFAIKQIGLEKVVPKKILKIMNVPNLTRENVASHLQKYRKFLRDIDEKGMTGGISQRVLRFYPEKDLLYDGSSSSISFSSYGEGQGWMSSPTTSSSSFLTRDLNFNDMNLVNKLSKGGDEIEIAPQTENMSINSNESSKKLQGNNGFSKEGSSKESTSTNDLEFDMDVIEALFGTIED* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1820 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 143 IPR017930 -
Psa1g1820 278 MobiDBLite consensus disorder prediction 226 261 - -
Psa1g1820 278 PANTHER RESPONSE REGULATOR 23-RELATED 1 256 - -
Psa1g1820 278 SUPERFAMILY Homeodomain-like 85 144 IPR009057 -
Psa1g1820 278 Gene3D - 84 144 - -
Psa1g1820 278 Pfam Myb-like DNA-binding domain 91 139 IPR001005 -
Psa1g1820 278 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 256 IPR045279 GO:0009736
Psa1g1820 278 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 87 140 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1820 Psa-Chr1 130535840 130537928 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1820 1 157 Response Regulator Gene Family AT3G16857 36.923 3.86e-28 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Psa1g1820 Myb_DNA-binding 1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1820 - K14491 mtr:MTR_7g026400 201.445