Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1808 ATGGAGATTCACAGAAACACAAACAAGAAATGGGGAGGTGCAAAAAAGGAATCAAAATGGAAGAAAATGATTTTCTTCAACACTTCAAAAACTACCCAAAATCCACCTCAAGAATTTCTATGCCCCATTTCTGGTTCTCTCATGTCCGACCCTGTAATTGTCTCCTCCGGCCATTCCTTCGACCGAACCTCAATCCAAGCCTGTAAAAATCTCAACTTTACCCCTCAACTTCAAGATGGCACCACCCCCAATTTCACAACCGTAATCCCAAATCTTAACCTCAAATCCTCCATTCTCAAATGGACCCAAACCCAAACCCAATCCCAATCCAAATTCCAAACCCAAACCAACCAAAATCTCACCACAACTGAAAACCTCGTACGTACGCTAATGTTCTCTAAGAAACATCAACAACCCCAAAACGACGTCGTATCAGAGAAAAACGACCAGGAAAAAGAAACACTACAAATCTCAATCTTAACCCCACAAAAAACCTCGTACTCGAGCTCAGAGGAATCCATAGCTACTGCCACATCATCATCAACAACAACACCAAAATTTCAAAGCTTCTCCTACTCTTCACCTTCCTCTTCCGAAATTGAACCTTCAACAACACCGGAAGAAGAAGAATTCGTGACCAAACTCAGAAACCCTCAATCGATTATAGTAGAAGAAGCTCTAATCTCTCTCAGAAAAATCACGAAAACGAAAGAGGAATCTAGGGTTCAACTCTGCACCAATAGGATACTCTGTTCTTTGCGTTCTTTGATTTTGTTCAAAAACGACGTCGTAAGAGTCAACGCTCTTGCTTCATTAGTCAACCTTTCTCTCGAGAAAGTTAACAAAGTGAAGATCGTACGGTCAGGAATAGTTCCACCGTTGATTGAGGTTTTGAAGTTCGGATCCAGTGAATCGCAGGAACATGCTTCCTGTGTGCTCTTTAGTTTAGCGCTTGATGATGATAATAAAACTGCCATTGGTGTTTTAGGTGCACTTTTGCCATTGCTTCACGCGCTTAAATCGGAGAGTGAGAAGACGCGTCATGACTCGAGTTTGGCTCTTTGTCATTTGTCTTTAGTGAAGAGTAACAGGGCAGTGGCGAAAAAGATTAGGGTTGTGGAAATGTTGCAAAAGATAGAGAAAATGAAGAGTGAGAAAGTTAATGAGAAAGTACAGAGGATATTGGAGATTATGAGTGAGAAAGAGGTGGAAGAGGAAGAGGTAGATTGGGAGGAGTTGCTTGACTCAGGGTTCAGTGGCCGAACTATGAGTCAACTCAGTAATGGGTTGGACGAATCAAATGCTAACTCGAATGAATTTTGA 1323 0.4172 MEIHRNTNKKWGGAKKESKWKKMIFFNTSKTTQNPPQEFLCPISGSLMSDPVIVSSGHSFDRTSIQACKNLNFTPQLQDGTTPNFTTVIPNLNLKSSILKWTQTQTQSQSKFQTQTNQNLTTTENLVRTLMFSKKHQQPQNDVVSEKNDQEKETLQISILTPQKTSYSSSEESIATATSSSTTTPKFQSFSYSSPSSSEIEPSTTPEEEEFVTKLRNPQSIIVEEALISLRKITKTKEESRVQLCTNRILCSLRSLILFKNDVVRVNALASLVNLSLEKVNKVKIVRSGIVPPLIEVLKFGSSESQEHASCVLFSLALDDDNKTAIGVLGALLPLLHALKSESEKTRHDSSLALCHLSLVKSNRAVAKKIRVVEMLQKIEKMKSEKVNEKVQRILEIMSEKEVEEEEVDWEELLDSGFSGRTMSQLSNGLDESNANSNEF* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1808 440 Gene3D - 209 409 IPR011989 -
Psa1g1808 440 Pfam U-box domain 36 105 IPR003613 GO:0004842|GO:0016567
Psa1g1808 440 MobiDBLite consensus disorder prediction 154 202 - -
Psa1g1808 440 SUPERFAMILY RING/U-box 28 104 - -
Psa1g1808 440 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 364 424 - -
Psa1g1808 440 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 18 365 - -
Psa1g1808 440 PANTHER U BOX DOMAIN-CONTAINING 18 365 - -
Psa1g1808 440 PANTHER U BOX DOMAIN-CONTAINING 364 424 - -
Psa1g1808 440 MobiDBLite consensus disorder prediction 134 212 - -
Psa1g1808 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 122 IPR013083 -
Psa1g1808 440 SUPERFAMILY ARM repeat 210 400 IPR016024 -
Psa1g1808 440 SMART Ubox_2 38 101 IPR003613 GO:0004842|GO:0016567
Psa1g1808 440 ProSiteProfiles U-box domain profile. 34 108 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1808 Psa-Chr1 129875942 129878211 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1808 36 417 U-box Gene Family AT5G40140 47.103 6.02e-99 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1808 - - lja:Lj2g3v1020040.1 374.015