Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1786 CATAGATGGACGGGTAGATATGAAGCTCACTTATGGGACAAGCTTTCTTGGAACATAACCCAAAAAAAGAAAGGGAAGCAAGGAGCTTACGACGACGAAATATCAGCAGCCAGAGCATATGATTTAGCTGCACTAAAGTACTGGGGAACATTGACTGTCACCAATTTTCCTATCGCAGAGTATGAAGAACAAGTAGAAATAATGCAAACTATGACAAAAGAGGAGTACTTGGCCACATTAAGAAGAAAGAGCAGCGGTTTTTCAAGAGGGGCATCAAAGTATAGGGGTGTTGCAAGGCACCACCACAACGGTAGATGGGAAGCACGGATCGGAAGGGTTTTTGGAAACAAGTATCTCTACCTTGGCACCTACAGTACCCAAGAGGAAGCTGCTCGTGCTTATGACATAGCAGCCATTGAGTACAGAGGGAGTCATGCTATTACCAACTTCGACTTGAGTACTTATATGAGATGGTTAAAATCTTCAGAAGGAAATATCTCAGAAACAAAACTCGAAAAGCTGGAAGTACCAGAGTCTCAGACAGTGGCATCCCAATCTAACTGTTTTTCAGTTGATGGATTGAAATCCTTGTCCATCCACAGCAGTACTTATAACTCAGATTATCTGAATTCCCCTCAAAAGTATGAAGTTTTTGACAATAAAAAACACCATATGTCCAGCACTAAGTCGTGTTCTTCTCCCACTGCACTTGGACTGCTTTTCCGCTCTACAGTATTTAGAGAATTAGTGAAAAAGAATTCAAACATATCTGGAGATGAAACTGATGGGGAAGACACAAACGATAGACGGCCAAAGACGGCAAATGACGATGATGACGAGTTGGATGGGATCTTCTGTGATGGAATTAGGGATATCCCGTTTCTGAAACCCCAATAG 897 0.4214 HRWTGRYEAHLWDKLSWNITQKKKGKQGAYDDEISAARAYDLAALKYWGTLTVTNFPIAEYEEQVEIMQTMTKEEYLATLRRKSSGFSRGASKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGSHAITNFDLSTYMRWLKSSEGNISETKLEKLEVPESQTVASQSNCFSVDGLKSLSIHSSTYNSDYLNSPQKYEVFDNKKHHMSSTKSCSSPTALGLLFRSTVFRELVKKNSNISGDETDGEDTNDRRPKTANDDDDELDGIFCDGIRDIPFLKPQ* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1786 298 Pfam AP2 domain 92 143 IPR001471 GO:0003700|GO:0006355
Psa1g1786 298 CDD AP2 1 59 IPR001471 GO:0003700|GO:0006355
Psa1g1786 298 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 289 - -
Psa1g1786 298 MobiDBLite consensus disorder prediction 255 279 - -
Psa1g1786 298 SUPERFAMILY DNA-binding domain 2 58 IPR016177 GO:0003677
Psa1g1786 298 Gene3D AP2/ERF domain 1 59 IPR036955 GO:0003700|GO:0006355
Psa1g1786 298 Gene3D AP2/ERF domain 92 153 IPR036955 GO:0003700|GO:0006355
Psa1g1786 298 MobiDBLite consensus disorder prediction 255 281 - -
Psa1g1786 298 SUPERFAMILY DNA-binding domain 92 153 IPR016177 GO:0003677
Psa1g1786 298 ProSiteProfiles AP2/ERF domain profile. 1 57 IPR001471 GO:0003700|GO:0006355
Psa1g1786 298 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 289 - -
Psa1g1786 298 SMART rav1_2 93 157 IPR001471 GO:0003700|GO:0006355
Psa1g1786 298 SMART rav1_2 1 63 IPR001471 GO:0003700|GO:0006355
Psa1g1786 298 CDD AP2 92 153 IPR001471 GO:0003700|GO:0006355
Psa1g1786 298 ProSiteProfiles AP2/ERF domain profile. 93 151 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1786 Psa-Chr1 128563850 128566189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1786 1 155 AP2-EREBP Transcription Factor Family AT5G57390 68.987 5.43e-74 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa1g1786 AP2 4.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1786 - - ahf:112716370 441.039