Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1776 ATGAAGAGGGCAAGAGATGATATTTACTCTGCCTCTCAATTCAAACGTCCTTATGGTTCTTCACGTGGTGATTCCTATGGCCAAGGCCAAGGTCAAGTCCCTGGAAATGGAGGTGGTGGTGGCGGAGGTGGACTTGTTATCGGTGGTGGGGGAGCAACTACTTCTCAGAAACTGACTACCAATGATGCTTTATCGTATTTGAAGGAAGTGAAAGACATGTTCCAGGATCAAAAAGAAAAATACGACACGTTCCTTGAGGTCATGAAAGATTTCAAGGCTCAAAAGACCGACACTTCTGGTGTCATAGCAAGGGTCAAGGAACTATTCAAAGGTCACAACAATTTGATTTTTGGATTCAACACTTTTCTGCCAAAGGGATATGAGATAACACTTGATGAGGATGAAGCTCCTCCGAAGAAGACGGTTGAATTTGAAGAAGCCATTAGTTTTGTGAACAAGATAAAGAAACGATTCCAAAACGACGAGCATGTTTACAAATCATTCTTGGACATTTTGAATATGTATCGCAAAGAACACAAGGACATTGGTGATGTTTACAGTGAGGTTGCCATCCTTTTTAAGGAGCATAGAGACTTGCTCGAGGAGTTCACTAGATTCTTACCAGATAATTCTGCAGCACCTTCCACACAGCATGCTCCATTTGGTAGAAATTCATTGCAGCGCTTCAATGAGCGAGGCTCAATGGCACCCATGATGCGGCAAATGCAAGTAGAAAAGCAACGATATCGGCGAGACCGTTTTCCTTCTCATGATCGTGATCTGAGTGTTGAACGTCCTGATCTGGATGACGACAAAACAATGATGAACTTGCACAAGGAACAAAGGAAACGTGAGAGTAGGGATAGAAGGATCCGTGATCATGATGAAAGAGAACATGATCTTGGTAACTCACAACGCTTTCCTGATAAAAAGAAATCTGTTAAGAAAGCTGAAGCTTATGGATTGTCTTCTGACTATGCTTCTCATGATGATAAAGATGCATTAAAGAGCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGCAATGACTACCAAACATTCTTGAAATGCCTTCATATATTTAGCAATGGAATAATAAAAAGGAATGATTTACAAAATTTGGTGACCGATTTACTTGGAAAGCATTCGGATCTCATGAGCGAATTCAATGATTTCTTGGAGCGTTGTGAAAATATTGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAGCCACTAGCTACTGATGGTCATTTATCAAGATCAGCCAAGTTGGAGGACAAAGAACACAAACGTGAGATGGATGGAGCTAAAGAGAAGGAAAGATACAAGGAGAAATACATGGGAAAATCCATTCAGGAACTCGACCTTAGCGACTGCAAACGTTGTTCTCCTAGCTACCGACTTCTACCTGCTGATTATCCGATTCCTATGGCTAGTCAGCGATCTGAGCTTGGCGCACAAGTGTTGAATGATCACTGGGTATCTGTGACTTCAGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGGAATCAATACGAAGAAAGCTTGTTCAGATGTGAAGATGACAGGTTTGAGCTCGACATGTTACTAGAGTCTGTGAGTTCCGCTGCTAAACGAGCTGATGAGTTGTACACCAACATTATTGAAAATAAGATCAGCGTGGAGAGTCTGAGTCGTATTGAAGATCACTTTACTGTTCTGAATTTAAGATGCATTGAACGCCTATATGGTGACCATGGTCTTGATGTCCTAGACATACTGCGTAAGAACCCAACTCATGCTCTTCCTGTAATATTGACTCGATTGAAGCAGAAACAAGAGGAGTGGAACAGGTGTCGTACAGATTTCAATAAAGTCTGGGCTGACATTTATTCTAAAAATCACTACAAATCACTTGATCACCGTAGCTTCTACTTCAAGCAACAAGATTCGAAGAACTTGAGCACCAAATCTTTGGTGTCTGAGATTAAAGAAATTAAAGAGAAGCAGCAGAAAGAAGATGACATTGTACAGTCTATTGCTGCTGGGGCTAAACATTCTCTCCTTCCACATTTGGAGTTCGACTTTTCTGATGCCGAAATTCACGAGGACTTGTATAAACTTGTTCGCTATTCGTGTGAGGAGGTATTCTCAAGTAAAGAGTTATTCAACAAAATTATGAGGCTCTGGAGTTCCTTCTTGGAACCGATGCTTGGTGTTGTTACTTCCCAATCACATGGAACCGAAAGGGTAGAGGACAGGAAAGTAGGTCATAACGCCCGAAGTTCTGTTGCACCAAATGTAGGAGGTGATGGAAGCCCTCACAGAGAATCAATTTCAAGGATACCAAAACCTGATAAGAATGAAGGTGATGGCAGAGTAACTGAAGTGAAAAATGTTCACCGGACTAGTTTAGCGGCCAATGATAAAGAAAATGGTTCTGTTGGTAGCGAACTCGTTAGTAGAGATGATCTTTTAATGGATAAAGGGCAGAAAAATGTTGACTGCAATGATAATAAAGCCCCTGGATTTAGTAAACAGTTTTCCTCTGATGAACCAGGAGTTAGAAACACTGCATCTGTTGCAATTAGAGGCGAAAGCAGTGTGAACAGAACCAACTTAGATATGTCTCCAGGCCGAATACTTACTCCATCCCGACCTACTGATGCTGATGTCTCTGGAGCCAAAGCCAAGTCTCCGAGTGCTAATCTACCTTTGGTAGAGCGATGTGATGCTATCGCTCGATCTCCAGTACCAGTGGCCAATGGCATGTTTGTTGAGAACAGTAAAGTTAAAAGCTATGAAGAATCTTCTGTGCCTTGCAAAACTGAAAAAGAAGAGGGTGAATTATCTCCAAATGCCGACTCTGAGGAGGATAACTTTGTTGCCTATGATTCAAACCTGCAGTCAATTGCAAAGGCTGGAGGTGATAATGATGCAGATGCTGATGATGAAGATAGCGAAAATGTTTCTGAAGCTGGCGAAGATGTGTCGGGAAGTGAATCTCCTGGTGATGAATGTTCCCGGGGAGATCACGAGGAGGAGGAAGATATGGAACATGATGATGTTGATGGTAAAGCTGAGAGTGAAGGTGAGGCTGAGGGGATGTGTGATGCACAAAATGGTGGAGATGGCTCATCTTTACCGTTATCAGAGAGGTTCCTTTCGACTGTGAAACCTCTCACAAAGCATGTATCAGCCGTTTCATTCGTTGAAGATGTGAAGGATTCAAGGGTGTTTTACGGAAATGATGATTTCTTTGCGCTTTTTAGGCTTCATCAAATTCTTTACGAAAGGATCTTATCTGCAAAAGAAAATTCAACTACTGCTGAAATGAAACGGAAAGCAAAAGATGCTAGTTCTACGGATCCTTATGCAAGATTCATGGACGCGTTATATAATTTGCTCGATGGATCCGTTGAGAATGCTAAGTTTGAAGATGAATGTCGAGCAATTCTTGGAAACCAGTCTTATGTGTTATTCACCTTGGACAAGTTAATCTATAAACTTATCAGACAGCTTCAAACTGTTGCAACCGATGAGGAAGACAATAAGCTTCTCCAATTATACGAGTACGAAAAGTCTCGGAAACCAGACAAATTAAATGATTCAGTATATCATTCAAACGCACATGTCATCCTTCATGACGAAAACATATATCGATTTCAATGTTCGTCTAGCCCCTCTCGACTCTCCATACAACTCATGGACAATATGAATGAAAAACCCGAGATTGCTGCTGTTTCTGTTGATCCAAATTTTTCTTTTTATCTGCACAATGATTTTCTGTCGGTTCTACCTAGCAAAAAGGAGCCTCATGGCATTTTACTAGAAAGAAACAAATCGAAATACGGGGATTTAGATGAGCTTTCTGCAATTTGCGCTGTAATGGAAGATGTCAAAGTAGTTAATGGATTGGAATGCAAGATATCTTGCAACTCATCCAAGATTTCTTATGTTCTTGACACACAAGATTTTTTCTTCCGCCCAAGAAGGAAAAGACGAACCTCGTCATCATCATCATCATCAAGTACATCATCTTCTCGGTCTCGCAGGGAAAGAGAGGAAAGATTTCGCAAATTTATGGCATCTTCCATCTAA 4104 0.4115 MKRARDDIYSASQFKRPYGSSRGDSYGQGQGQVPGNGGGGGGGGLVIGGGGATTSQKLTTNDALSYLKEVKDMFQDQKEKYDTFLEVMKDFKAQKTDTSGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKDIGDVYSEVAILFKEHRDLLEEFTRFLPDNSAAPSTQHAPFGRNSLQRFNERGSMAPMMRQMQVEKQRYRRDRFPSHDRDLSVERPDLDDDKTMMNLHKEQRKRESRDRRIRDHDEREHDLGNSQRFPDKKKSVKKAEAYGLSSDYASHDDKDALKSMYSQAFSFCEKVKEKLSSNDYQTFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLMSEFNDFLERCENIDGFLAGVMSKKPLATDGHLSRSAKLEDKEHKREMDGAKEKERYKEKYMGKSIQELDLSDCKRCSPSYRLLPADYPIPMASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKRADELYTNIIENKISVESLSRIEDHFTVLNLRCIERLYGDHGLDVLDILRKNPTHALPVILTRLKQKQEEWNRCRTDFNKVWADIYSKNHYKSLDHRSFYFKQQDSKNLSTKSLVSEIKEIKEKQQKEDDIVQSIAAGAKHSLLPHLEFDFSDAEIHEDLYKLVRYSCEEVFSSKELFNKIMRLWSSFLEPMLGVVTSQSHGTERVEDRKVGHNARSSVAPNVGGDGSPHRESISRIPKPDKNEGDGRVTEVKNVHRTSLAANDKENGSVGSELVSRDDLLMDKGQKNVDCNDNKAPGFSKQFSSDEPGVRNTASVAIRGESSVNRTNLDMSPGRILTPSRPTDADVSGAKAKSPSANLPLVERCDAIARSPVPVANGMFVENSKVKSYEESSVPCKTEKEEGELSPNADSEEDNFVAYDSNLQSIAKAGGDNDADADDEDSENVSEAGEDVSGSESPGDECSRGDHEEEEDMEHDDVDGKAESEGEAEGMCDAQNGGDGSSLPLSERFLSTVKPLTKHVSAVSFVEDVKDSRVFYGNDDFFALFRLHQILYERILSAKENSTTAEMKRKAKDASSTDPYARFMDALYNLLDGSVENAKFEDECRAILGNQSYVLFTLDKLIYKLIRQLQTVATDEEDNKLLQLYEYEKSRKPDKLNDSVYHSNAHVILHDENIYRFQCSSSPSRLSIQLMDNMNEKPEIAAVSVDPNFSFYLHNDFLSVLPSKKEPHGILLERNKSKYGDLDELSAICAVMEDVKVVNGLECKISCNSSKISYVLDTQDFFFRPRRKRRTSSSSSSSSTSSSRSRREREERFRKFMASSI* 1368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1776 1367 ProSiteProfiles PAH domain profile. 140 210 IPR003822 GO:0006355
Psa1g1776 1367 MobiDBLite consensus disorder prediction 977 1035 - -
Psa1g1776 1367 ProSiteProfiles PAH domain profile. 56 126 IPR003822 GO:0006355
Psa1g1776 1367 Gene3D Paired amphipathic helix 139 211 IPR036600 GO:0006355
Psa1g1776 1367 Gene3D Paired amphipathic helix 62 124 IPR036600 GO:0006355
Psa1g1776 1367 Gene3D Paired amphipathic helix 332 405 IPR036600 GO:0006355
Psa1g1776 1367 MobiDBLite consensus disorder prediction 426 445 - -
Psa1g1776 1367 MobiDBLite consensus disorder prediction 745 794 - -
Psa1g1776 1367 MobiDBLite consensus disorder prediction 778 794 - -
Psa1g1776 1367 SUPERFAMILY PAH2 domain 338 403 IPR036600 GO:0006355
Psa1g1776 1367 SUPERFAMILY PAH2 domain 137 209 IPR036600 GO:0006355
Psa1g1776 1367 ProSiteProfiles PAH domain profile. 335 403 IPR003822 GO:0006355
Psa1g1776 1367 MobiDBLite consensus disorder prediction 1 27 - -
Psa1g1776 1367 Pfam Sin3 family co-repressor 467 558 IPR013194 -
Psa1g1776 1367 MobiDBLite consensus disorder prediction 1349 1367 - -
Psa1g1776 1367 MobiDBLite consensus disorder prediction 244 314 - -
Psa1g1776 1367 MobiDBLite consensus disorder prediction 932 957 - -
Psa1g1776 1367 Pfam C-terminal domain of Sin3a protein 1081 1328 IPR031693 -
Psa1g1776 1367 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1347 - -
Psa1g1776 1367 SMART hdac_interact2seq4b 465 565 IPR013194 -
Psa1g1776 1367 MobiDBLite consensus disorder prediction 424 445 - -
Psa1g1776 1367 MobiDBLite consensus disorder prediction 1335 1367 - -
Psa1g1776 1367 Pfam Paired amphipathic helix repeat 163 207 IPR003822 GO:0006355
Psa1g1776 1367 Pfam Paired amphipathic helix repeat 79 123 IPR003822 GO:0006355
Psa1g1776 1367 Pfam Paired amphipathic helix repeat 358 400 IPR003822 GO:0006355
Psa1g1776 1367 PANTHER SIN3B-RELATED 1 1347 IPR039774 GO:0003714
Psa1g1776 1367 MobiDBLite consensus disorder prediction 230 314 - -
Psa1g1776 1367 SUPERFAMILY PAH2 domain 54 125 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1776 Psa-Chr1 128073648 128082353 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1776 45 159 WRKY Transcription Factor Family AT4G12020 52.586 5.16e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa1g1776 Sin3a_C 6.7e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1776 K11644 - gmx:100807181 2129.75