Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1767 ATGAATAATATCAAATCAAACAAGGCTTGTGCATCATGCAAACTTCAAAGAAGAAGGTGTCTAAAAGATTGTCTTTTAGCTCCTCATTTTCCAGCCGATAAACCAATAACATTCGCCAATGCTCATCGATTGTATGGTGTTTCTAACATGGTGAGGATTCTAGAGAATATTCCAGAAGAGATGAGACAGATAGCAATGAGAACAATTATTTATGAATCAAATGTCCGCTTGATGTTTCCAGTTCATGGATGTCTTGGTGTTATTAAGGAATGTTGTGATATGATAAGTGAGGCTTTTAAAGAGTTATGTCAAGTAAAAGAGTTACTACATTATTGTAAGGTAAATCATTTACAACAACTAAATCTTTCCTCTTTGCTACCTTCTACAAGTTCTCAAAATCCAAATCTTCAACCACATGTTCCAATGGATTGTCCTTTGAGAGCTTCTACTAATTCTCATGTTTCTAATATTCCAATATTTAACAATGTTGGTAATGTTTCTGATTATTGGAATGATATCATTCCAAGTGATGTTAACAATATTCCGACTAATACAAATTTGAATATAAATTCAAATGAAGCAATAAGGGTTGCACAATTGAATGAAGAACTTTCCGATAATAAAGAATCTGATCTTCATGGTGGTGGTGTTGATACAAATACTAGTGTGAAAGTTGATTTGGAGGAAAAGGAAACACCGTTTAATGTTGATGATTTCTTCATTCCAGATTCTGATATTGATAAGTTTTATTAG 753 0.3254 MNNIKSNKACASCKLQRRRCLKDCLLAPHFPADKPITFANAHRLYGVSNMVRILENIPEEMRQIAMRTIIYESNVRLMFPVHGCLGVIKECCDMISEAFKELCQVKELLHYCKVNHLQQLNLSSLLPSTSSQNPNLQPHVPMDCPLRASTNSHVSNIPIFNNVGNVSDYWNDIIPSDVNNIPTNTNLNINSNEAIRVAQLNEELSDNKESDLHGGGVDTNTSVKVDLEEKETPFNVDDFFIPDSDIDKFY* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1767 250 PANTHER LOB DOMAIN-CONTAINING PROTEIN 27-RELATED 5 178 - -
Psa1g1767 250 Pfam Lateral organ boundaries (LOB) domain 9 105 IPR004883 -
Psa1g1767 250 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 178 - -
Psa1g1767 250 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1767 Psa-Chr1 125583771 125584700 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1767 6 110 AS2 family AT3G47870 50.476 5.56e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa1g1767 LOB 6.9e-31 No_clan