Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1753 ATGGGTGGAGGTGGTGATCGGAAAAATGTTTCTATTATTAAAAAGAAGAAAAAGAAAAATGGTTCTTTTAAGTCCATTTTCATGCATGCTGATGTTCTTGACTGTTTTTTCATGGCTTTTGGTTTGTTGGGATCCATTGGTGATGGAATGATGACCCCTTTGGTTTTGTTTATCACAAGCAAAATTATGAACTCTATTGGTAGTGTTTCTAACACATCAAGCAACAATTTTGTCCATAAAATCAACGAGAATGCCGTTTTTTTGTTATATTTGGCATGCGCTGCTTTTGTTGCTTGCTTCCTAGAGGGTTATTGTTGGACAAGAACAGGTGAAAGACAAGCTGCAAGAATGAGATCTAGGTACTTAAAAGCAGTTCTAAGACAAGAAGTAGGATATTTTGATGTACATGTTACAAGTACATCAGAAGTCATCACTAGTGTCTCTAATGACAGCCTAGTAATTCAAGATGTTCTTAGTGAAAAGGTTCCAAATTTTGTGATGAATGCATCTATGTTCTTTGGGAGCTACATAGTAGCATTTGCAATGTTATGGAGATTGGCAATTGTTGGATTCCCTTTTATTGTTCTACTTGTGATACCTGGTTTAATGTATGGGAGAACTTTGATGGGATTGGCTAAAAAAATCCGAGACGAATACAATAAAGCCGGTACAATAGCAGAACAAGCAATATCTTCTATCAGAACAGTTTATTCCTTTGCAGGAGAAAACAAAACCATAGTTGCTTTCTCTGATGCTTTAGAAGGATCAGTGAAGTTGGGATTGAAACAAGGCTTAGCTAAAGGTTTAGCCATAGGAAGCAATGGTGTTGTTTTTGCTATATGGTCTTTTATGGCATATTACGGTAGCAGAATGGTTATGTACCATGGTGCGAAAGGTGGAACTGTATTTGCAGTTGGAGCTTCACTAGCACTTGGTGGATTGGCTTTAGGAGCTGGTTTATCCAATGTGAAGTACTTTTCAGAAGCAAGTGTTGCGGGAGAAAGAATAATGGAGGTGATAAAAAGAGTTCCAAAGATAGATTCTGAGAACATGGAAGGTGAAGTTCTAGAGAAAGTGTTGGGGGAAGTTGAATTCAACCATGTTGAATTTGTGTATCCGTCGAGGCCAGAAAGTGTGATCTTAAATGATTTTTGCCTAAAGGTTCCATCAGGTAAAACGGTTGCGTTAGTAGGAGGCAGTGGTTCTGGAAAATCGACTGTGATATCGCTTTTGCAAAGGTTTTATGATCCAATTGGTGGAGAGATTCTTTTTGATGGAGTTGCTATTCATAAGTTGCAACTGAAATGGCTTAGGTCTCAAATGGGATTGGTGAGTCAAGAACCTGCTTTGTTTGCAACAAGTATTAAAGAGAATATACTTTTTGGAAGAGAGGATGCTACTATACTTCTACAACAACTACGACGATTTCGAAGGTTACGAGATAATTTCATTTCAATGTTGCCACAAGGATATGATACTCAGGTTGGAGAGAGAGGAGTTCAGATGTCAGGAGGACAAAAGCAAAGGATTGCCATTGCAAGAGCTATAATAAAAAAGCCAAAAATTCTATTGCTAGACGAAGCAACAAGTGCACTCGATTCTGAATCCGAACGAGTCGTCCAACAAGCTTTAGACAAAGCATCGGTCGGACGCACCACCATCATCATCGCTCACCGATTATCCACCATCCAAAATGCAGACATCATTGCAGTTGTTCAAAATGGTAAAATCATGGAAACGGGATCTCACGAAAGCCTCATGGAAAATGACAATTCTCTTTACACTTCCCTAGTCCGTCTTCAACAAACCAGAAATGACCAAAACAACGACAATTCATCTATCTTGAATAGAGATCGCATGCAAAACACGAGTAGTCGTAGACTCGTGAGTCGTTCTAGCTCTTTCAACTCAATGTCACGAGGTGGTGATGATATCGTTAATTATAACAATGATGTTGAAGATAGTGTCAATAGCGTTGTTATAGTTGATGATCTTCATAATAAAAATAAGAAGAAAAAGAAGGAGAAGGTTGAGGTTCCTTCGTTTCGAAGGTTGTTGGCAATGAATTTGCCTGAGTGGAAGCAAGCGTGTTTGGGTTGTTTGAACGCGCTTTTATTTGGCGCAATTCAACCTGTATATGCATTTGCAATGGGGTCGGTTATATCGGTTTATTTCCTCGAGGACCATGATGAGATCAAGAAGCAAATTAGGATCTATGCATTTTGTTTTCTAGGGTTGGCTGTGTCTTCAATGGTTTTCAATGTGCTTCAACATTATAGCTTTGCTTACATGGGAGAGTACTTGACTAAAAGGGTTAGAGAAAGAATGCTTTCCAAGATACTCACTTTTGAAGTTGGTGCTGTTTGCTCTAGACTTGCCAAAGAAGCCAATGTGGTAAGATCTTTGGTGGGTGATAGATTGGCTCTTGTGGTACAAACTATATCAGCAGTGGTGATAGCATTCACAATGGGCCTAGTCATTGCATGGAGACTAGCCATTGTTATGATAGCAGTTCAACCAATAATCATATGTTGTTTCTACACAAGGCGTGTCCTTCTAAAGAACATGTCAAGTAAAGCTATTAAGGCTCAAGATGAATGTAGCAAAATAGCTGCTGAAGCTGTTTCAAATCTAAGAACCATAACTTCTTTTTCATCCCAAGATAGAATCCTCAAAATACTTGAAAAAGCCCAACAAGGGCCAAGTCAAGAAAGCATTAGACAGTCTTGGTTTGCAGGTATTGGGCTTGCGTGTTCGCAAAGCCTCAATTTTTGTACTTGGGCTTTGGACTTTTGGTATGGTGGAAAACTTGTGTCACAAGGTTATATTTCGGGTAAGGCGTTGTTCGAGACTTTTATGATCTTGGTAAGCACGGGAAGAGTTATTGCTGATGCTGGTAGCATGACGAATGATCTTGCTAAAGGCTCTGATGCTGTTGGATCTGTTTTCGCAATTCTTGATAGGTATACAAAAATTGAGCCAGATGATTTAGAAGGTTACGAAACCGAAAAATTAATAGGAAAAATTGAACTTCATGATGTGCATTTTGCATATCCAGCTAGACCTAATGTGATGATCTTTCAAGGGTTCTCGATTAAAATTGACGCCGGAAAATCAACGGCTTTGGTCGGGGAAAGTGGTTCGGGAAAATCTACAATCATAGGACTAATTGAGAGATTCTATGATCCTTTTAAAGGGACGGTGACAATAGATGGTAGAGACATAAAATCTTATAATTTAAGATCGTTAAGGAAACACATTGCACTTGTGAGTCAAGAACCGACATTGTTTGGAGGTACCATAAGGGAAAATATTGCATACGGAGCATATGATGATAAAGTTAATGAGAGTGAGATTATTGAGGCTGCAAAAGCTGCAAATGCTCATGATTTTATATCAAGCTTAAAAGATGGTTATGAGACATGGTGTGGTGATAGAGGAGTTCAACTTAGTGGTGGTCAAAAGCAAAGAATTGCAATAGCTAGAGCTATATTGAAGAATCCAGAGGTGTTACTTTTGGATGAAGCAACAAGTGCACTTGATAGTCAATCAGAGAAATTAGTGCAAGATGCTTTAGAAAGGGTTATGGTTGGAAGGACAAGTGTGGTTGTGGCTCATAGGTTGAGTACTATACAAAACTGTGATTTGATTGCTGTTTTGGATAAGGGAAGTGTTGTTGAGAAAGGAACACATTCATCTCTGTTGGCTAAGGGACCAAGTGGAGCTTATTACTCTTTGGTGAGTTTACAGAGAAGACCAACCAACACAATCGTCCATTCTTCACATGAAATCAACTAA 3798 0.3886 MGGGGDRKNVSIIKKKKKKNGSFKSIFMHADVLDCFFMAFGLLGSIGDGMMTPLVLFITSKIMNSIGSVSNTSSNNFVHKINENAVFLLYLACAAFVACFLEGYCWTRTGERQAARMRSRYLKAVLRQEVGYFDVHVTSTSEVITSVSNDSLVIQDVLSEKVPNFVMNASMFFGSYIVAFAMLWRLAIVGFPFIVLLVIPGLMYGRTLMGLAKKIRDEYNKAGTIAEQAISSIRTVYSFAGENKTIVAFSDALEGSVKLGLKQGLAKGLAIGSNGVVFAIWSFMAYYGSRMVMYHGAKGGTVFAVGASLALGGLALGAGLSNVKYFSEASVAGERIMEVIKRVPKIDSENMEGEVLEKVLGEVEFNHVEFVYPSRPESVILNDFCLKVPSGKTVALVGGSGSGKSTVISLLQRFYDPIGGEILFDGVAIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGREDATILLQQLRRFRRLRDNFISMLPQGYDTQVGERGVQMSGGQKQRIAIARAIIKKPKILLLDEATSALDSESERVVQQALDKASVGRTTIIIAHRLSTIQNADIIAVVQNGKIMETGSHESLMENDNSLYTSLVRLQQTRNDQNNDNSSILNRDRMQNTSSRRLVSRSSSFNSMSRGGDDIVNYNNDVEDSVNSVVIVDDLHNKNKKKKKEKVEVPSFRRLLAMNLPEWKQACLGCLNALLFGAIQPVYAFAMGSVISVYFLEDHDEIKKQIRIYAFCFLGLAVSSMVFNVLQHYSFAYMGEYLTKRVRERMLSKILTFEVGAVCSRLAKEANVVRSLVGDRLALVVQTISAVVIAFTMGLVIAWRLAIVMIAVQPIIICCFYTRRVLLKNMSSKAIKAQDECSKIAAEAVSNLRTITSFSSQDRILKILEKAQQGPSQESIRQSWFAGIGLACSQSLNFCTWALDFWYGGKLVSQGYISGKALFETFMILVSTGRVIADAGSMTNDLAKGSDAVGSVFAILDRYTKIEPDDLEGYETEKLIGKIELHDVHFAYPARPNVMIFQGFSIKIDAGKSTALVGESGSGKSTIIGLIERFYDPFKGTVTIDGRDIKSYNLRSLRKHIALVSQEPTLFGGTIRENIAYGAYDDKVNESEIIEAAKAANAHDFISSLKDGYETWCGDRGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKLVQDALERVMVGRTSVVVAHRLSTIQNCDLIAVLDKGSVVEKGTHSSLLAKGPSGAYYSLVSLQRRPTNTIVHSSHEIN* 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1753 1265 CDD ABC_MTABC3_MDL1_MDL2 1009 1250 - -
Psa1g1753 1265 Gene3D ABC transporter type 1, transmembrane domain 643 996 IPR036640 GO:0005524|GO:0016021
Psa1g1753 1265 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 39 328 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g1753 1265 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 23 1255 IPR039421 -
Psa1g1753 1265 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 703 974 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g1753 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1003 1250 IPR027417 -
Psa1g1753 1265 CDD ABC_6TM_Pgp_ABCB1_D2_like 686 992 - -
Psa1g1753 1265 Gene3D ABC transporter type 1, transmembrane domain 26 617 IPR036640 GO:0005524|GO:0016021
Psa1g1753 1265 Pfam ABC transporter transmembrane region 39 304 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g1753 1265 Pfam ABC transporter transmembrane region 698 955 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g1753 1265 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 23 1255 - -
Psa1g1753 1265 SMART AAA_5 1036 1230 IPR003593 -
Psa1g1753 1265 SMART AAA_5 390 692 IPR003593 -
Psa1g1753 1265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1009 1247 IPR003439 GO:0005524
Psa1g1753 1265 Gene3D - 999 1259 IPR027417 -
Psa1g1753 1265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524
Psa1g1753 1265 SUPERFAMILY ABC transporter transmembrane region 34 347 IPR036640 GO:0005524|GO:0016021
Psa1g1753 1265 Pfam ABC transporter 1028 1178 IPR003439 GO:0005524
Psa1g1753 1265 Pfam ABC transporter 381 530 IPR003439 GO:0005524
Psa1g1753 1265 MobiDBLite consensus disorder prediction 605 633 - -
Psa1g1753 1265 CDD ABC_MTABC3_MDL1_MDL2 363 601 - -
Psa1g1753 1265 CDD ABC_6TM_Pgp_ABCB1_D1_like 38 336 - -
Psa1g1753 1265 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524
Psa1g1753 1265 ProSitePatterns ABC transporters family signature. 1150 1164 IPR017871 GO:0005524
Psa1g1753 1265 SUPERFAMILY ABC transporter transmembrane region 683 993 IPR036640 GO:0005524|GO:0016021
Psa1g1753 1265 Gene3D - 353 602 IPR027417 -
Psa1g1753 1265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 601 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1753 Psa-Chr1 125015359 125022496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1753 698 1256 Calmodulin-binding Proteins AT2G36910 37.193 9.66e-111 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1753 K05658 - gmx:100807709 1916.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1753 1 125015359 125022496 Psa1g1753 1 125015359 125022496 ECH