Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1730 ATGGGGTTTGGGAAAAAGAATGCAATCAAAGCAGGGAGTTTAGAAGTTGACAAGTCAAAGGTTGATGTTGTAAAGAAAGAGAGAAGATGGCGGTTTAGATTCAGTTTCATTGGATGTTGCAAATCTTCAACATCAAAATTTGATAGTAACTCAATTTGTTGCAATGGCACTACTAGTACACAAAATGGTGATAATGTCAAGTCGGTTATAATTCAATCAGAGGAAAACAAATCTGTATTTGAAATCGACACAAAGGATTCAAGTGCTCCCGCAGATTCATCTACAACAACTAGTAATGGTGAAAGTATCTCCTCAACTTCGAAATTCAGCGAGGAGTTAAAGTTTGCTTCTTGTTTAAGAAAATTCACATTCAATGGGCTTAAGGTAGCAACTAGGAATTTCAGACCAGAGAGTCTTCTAGGTGAGGGAGGGTTTGGTTGTGTTTTCAAAGGTTGGATTGAAGTGAACGGAACCGCGCCTGTGAAACCGGGTACCGGACTTACGGTCGCTGTTAAGATTCTCAACCATAATGGACATCAAGGTCACAAAGAATGGCTTGCTGAATTAAACTATCTCGGCGATCTTGTTCATCCTAATCTTGTTAAATTGATAGGTTTTTGTATTGAAGATGACCAAAGACTATTGGTTTACGAGTTTATGCCGCGGGGAAGTTTGGAGAATCACCTCTTCAGAAGGCCCTTGCCTCTACCGTGGTCGATCAGAATGAAAATTGCGCTTGGTGCTGCAAAAGGTCTTGCTTTTCTCCACGAAGGAGCTCAAAGACCGGTGATATATCGGGATTTCAAGACATCTAATATTCTATTAGATGCGGAATACAATGCGAAGCTTTCTGATTTTGGACTCGCTAAAGATGCTCCTGAGGGTGAAAAAACACATGTATCAACAAGAGTTATGGGAACGTATGGTTATGCTGCTCCGGAATATGTGATGACCGGACATTTGTCATCAAAAAGTGACGTCTACAGCTTTGGAGTAGTGCTACTCGAAATGCTCACTGGCCGGCGATCCATTGACAAGAAAAGACCGAACGGAGAGCACAATCTGGTGGAATGGGCAAGACCTATACTTGGAGACAGGAGGATGTTCTACCGAATAATCGATCCCCGTCTCGAAGGTCACTTCTCAGTTAAAGGCGCGCAGAAAGCAGCACAGCTGGCTGCTCAATGCCTTAGCCGCGACCCAAAATCTAGACCTTTGATGAGTGATATTGTTCAAGCTTTAAAGCCTTTGCCAAACCTTAAGGATATGGCTGTATCATCTCATCAATTCAAGATTGCACGAGTTGATCGAACTATGTCCATGCCGAATCCTAAAAACAGTGTTAGAACAGATTTAGCATCTTTACCGAAAAAGGGTCAGCCTGTAAGGACGTTGTCGAGTTCAAATTACGGTAACGGCTCTCCATATCCTCGTCATAGCAACTCTCCAAAACCTATTATGTAA 1464 0.4214 MGFGKKNAIKAGSLEVDKSKVDVVKKERRWRFRFSFIGCCKSSTSKFDSNSICCNGTTSTQNGDNVKSVIIQSEENKSVFEIDTKDSSAPADSSTTTSNGESISSTSKFSEELKFASCLRKFTFNGLKVATRNFRPESLLGEGGFGCVFKGWIEVNGTAPVKPGTGLTVAVKILNHNGHQGHKEWLAELNYLGDLVHPNLVKLIGFCIEDDQRLLVYEFMPRGSLENHLFRRPLPLPWSIRMKIALGAAKGLAFLHEGAQRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDAPEGEKTHVSTRVMGTYGYAAPEYVMTGHLSSKSDVYSFGVVLLEMLTGRRSIDKKRPNGEHNLVEWARPILGDRRMFYRIIDPRLEGHFSVKGAQKAAQLAAQCLSRDPKSRPLMSDIVQALKPLPNLKDMAVSSHQFKIARVDRTMSMPNPKNSVRTDLASLPKKGQPVRTLSSSNYGNGSPYPRHSNSPKPIM* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1730 487 MobiDBLite consensus disorder prediction 82 102 - -
Psa1g1730 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Psa1g1730 487 Gene3D Phosphorylase Kinase; domain 1 93 219 - -
Psa1g1730 487 MobiDBLite consensus disorder prediction 435 487 - -
Psa1g1730 487 SUPERFAMILY Protein kinase-like (PK-like) 108 414 IPR011009 -
Psa1g1730 487 Pfam Protein kinase domain 137 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1730 487 ProSiteProfiles Protein kinase domain profile. 134 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1730 487 CDD STKc_IRAK 140 417 - -
Psa1g1730 487 PANTHER OS01G0588500 PROTEIN-RELATED 64 479 - -
Psa1g1730 487 PANTHER RECEPTOR-LIKE KINASE PLANT 64 479 - -
Psa1g1730 487 MobiDBLite consensus disorder prediction 87 102 - -
Psa1g1730 487 ProSitePatterns Protein kinases ATP-binding region signature. 140 172 IPR017441 GO:0005524
Psa1g1730 487 Gene3D Transferase(Phosphotransferase) domain 1 220 438 - -
Psa1g1730 487 MobiDBLite consensus disorder prediction 460 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1730 Psa-Chr1 123133525 123137003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1730 92 426 Glycoside Hydrolase AT3G07070 51.906 1.15e-113 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Psa1g1730 Pkinase 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1730 - - gmx:100499647 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1730 1 123133525 123137003 Psa3g4443 3 417682224 417686103 PCT