Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1727 ATGGGAAAATTAATGGTAGAAAGTTCTACTAAGATTGCCTTTATTCTTTTGGTTATTGCCACCATTACTATTCCATGCACTGAGGCTGGAATTGGTAAGTTTGATGATTTTCTTAAAAATCAATCTGAAGAAGCTCATAAACTAGTTCTTGAATCTTATGTTCCAAATCCTGAAGAAATTGCAGATGACCTCAATCTCCATGTTCATTTATCAATGGAAGGATTAAACAACACAAGGAGGGAATTGGGGCAAAAAGGTAAAAGAAAGTTAGGACCATGTGAAGCAACCAACCCAATTGATAGTTGTTGGAGATGCCAAAAGAATTGGGCTCAAAATAGATTTCAGTTAGCCAAATGTGGTAAAGGGTTTGGAAGAAGAGCCACTGGTGGACTTGGAGGCAGAATTTATGTAGTAACTGATCCTTCAGATAATGATATGGTGAGCCCTAAAGTTGGTACTCTTAGACATGCTGTTACCCAAAGGGGGCCATTGTGGATCATTTTCCAACGTAGTATGGTCATTAGATTGAACCAAGAATTGATGGTATCTTCCGACAAGACAATTGATGCTCGGGGTGCTAATGTTCAAATTAGAGATGGTGCTGGAATCACAATGCAATTTGTTAACAATGTTATGTTATTTGGAGCAAGTGATACATACAATGGTGACAAGATAATGCAAGTAACAGTAGCATTCAACCACTTTGGTCAAGGATTGATTCAAAGAATGCCAAGATGTAGATTTGGTTTTGTCCATGTTTTAAACAACGATTACACTCATTGGCAAATGTATGCAATTGGTGGAAGTGCAGGACCAACTATTCTTAGTCAAGGAAACCGTTTCATTGCACCATTCAATACTGCTGCAAAAGAAGTCACACATAGAGATTATGCTGGAAGTTCAGTTTGGAAAACTTGGCAATGGACTTCAGAAATGGATCTATTAATGAATGGTGCTAAATTTGTTCCATCTGGTTCACCAATCAATAAAGGTGCATTCAAAAAAGCGTTTATGATGAAACCAAGACCTGGAACTTATGCTAATAGACTAACAAGAAATGCTGGTGCCCTAAATTGTGTGGTAGGGAGGCCTTGTTAG 1098 0.3798 MGKLMVESSTKIAFILLVIATITIPCTEAGIGKFDDFLKNQSEEAHKLVLESYVPNPEEIADDLNLHVHLSMEGLNNTRRELGQKGKRKLGPCEATNPIDSCWRCQKNWAQNRFQLAKCGKGFGRRATGGLGGRIYVVTDPSDNDMVSPKVGTLRHAVTQRGPLWIIFQRSMVIRLNQELMVSSDKTIDARGANVQIRDGAGITMQFVNNVMLFGASDTYNGDKIMQVTVAFNHFGQGLIQRMPRCRFGFVHVLNNDYTHWQMYAIGGSAGPTILSQGNRFIAPFNTAAKEVTHRDYAGSSVWKTWQWTSEMDLLMNGAKFVPSGSPINKGAFKKAFMMKPRPGTYANRLTRNAGALNCVVGRPC* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1727 365 Pfam Pectate lyase, N terminus 31 82 IPR007524 GO:0030570
Psa1g1727 365 Pfam Pectate lyase 205 281 IPR002022 -
Psa1g1727 365 PANTHER PECTATE LYASE 209 365 - -
Psa1g1727 365 PANTHER PECTATE LYASE 10 212 - -
Psa1g1727 365 SMART amb_all 103 287 IPR002022 -
Psa1g1727 365 PRINTS Pollen allergen Amb family signature 119 136 IPR018082 -
Psa1g1727 365 PRINTS Pollen allergen Amb family signature 143 168 IPR018082 -
Psa1g1727 365 PRINTS Pollen allergen Amb family signature 179 195 IPR018082 -
Psa1g1727 365 Gene3D - 96 210 IPR012334 -
Psa1g1727 365 Gene3D - 211 358 IPR012334 -
Psa1g1727 365 SUPERFAMILY Pectin lyase-like 118 365 IPR011050 -
Psa1g1727 365 PANTHER PECTATE LYASE 18-RELATED 209 365 IPR045032 GO:0030570
Psa1g1727 365 PANTHER PECTATE LYASE 18-RELATED 10 212 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1727 Psa-Chr1 122902730 122906408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1727 51 365 Polysaccharide Lyase AT3G24230 38.791 4.10e-79 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1727 K01728 - gmx:100785801 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1727 1 122902730 122906408 Psa1g1727 1 122902730 122906408 ECH
Psa2g2810 2 326180220 326182301 Psa1g1727 1 122902730 122906408 ECH
Psa4g3033 4 246909705 246911225 Psa1g1727 1 122902730 122906408 ECH