Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1725 ATGGATTTTCCACCTTCTCATACTTTCATCTTTCAAACTCATCAAGATCATCATCATGATCAACTTCATTCATCTTCAACTTCTCTCAACTCTTTCCCTTCCTTTCCACCTCATCAACACTTTCAAGGTGGTGGTAGTAATGGTGGTGCATCATTCATGATGAAGAGATCCATGTCATTTTCAGGCATAGAGAACAATCACAATCACAATCACAATCACAACCACAACAACAAGTGTGATGAATTGATGCATGGTGATGAAGATCAATTATCAGATGATGAAGGTTACTCACAACTTGGTGAAAAGAAGAAGAGATTGAGTTTAGAACAAGTGAAAGCACTTGAGAAAAGTTTTGAGATTGGAAACAAACTTGAACCTGAGAGAAAAATGCAATTAGCAAAAGCTTTGGGATTGCAACCTAGACAAGTAGCTATATGGTTTCAAAATAGAAGAGCAAGGTGGAAAACAAAGCAACTTGAGAAAGAATATGAAGTTCTTAAGAAGCAATTTGAATCTCTTAGAGCTGATAATGATGTTCTTAAGGCACAAAACCACAAATTACATGCAGAGTTACAAACTCTAAAGAAAAAGGATTGCTTTGAAAATGGAAAAGCTAGTCTCAAAAAAGAAAATGAAGGATCATGGAGCAATGGAAGTGATAACAGTTCAGATATGAATCTAGATCTTTCTAGAACACCAATGATGAACAGTCCTGTTTCTTCACTAAATGGTAAAACTCTTATACAATCTTCCCTTAAGCCTACAAGCATGACACAGCTCCTTCAATGCTCAACAAGATCTGATCTTCAAGATGAAAGCTTTTGCAACATGTTTCACAACATTGATGAGCAACAAAGTTTATGGCCATGGCCTGATCAGCAGCACCACCATTTCCATTAA 900 0.3644 MDFPPSHTFIFQTHQDHHHDQLHSSSTSLNSFPSFPPHQHFQGGGSNGGASFMMKRSMSFSGIENNHNHNHNHNHNNKCDELMHGDEDQLSDDEGYSQLGEKKKRLSLEQVKALEKSFEIGNKLEPERKMQLAKALGLQPRQVAIWFQNRRARWKTKQLEKEYEVLKKQFESLRADNDVLKAQNHKLHAELQTLKKKDCFENGKASLKKENEGSWSNGSDNSSDMNLDLSRTPMMNSPVSSLNGKTLIQSSLKPTSMTQLLQCSTRSDLQDESFCNMFHNIDEQQSLWPWPDQQHHHFH* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1725 299 Coils Coil 149 197 - -
Psa1g1725 299 PRINTS Lambda-repressor HTH signature 128 137 IPR000047 GO:0003677
Psa1g1725 299 PRINTS Lambda-repressor HTH signature 137 153 IPR000047 GO:0003677
Psa1g1725 299 ProSiteProfiles 'Homeobox' domain profile. 97 157 IPR001356 GO:0003677
Psa1g1725 299 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 299 IPR045224 GO:0003700
Psa1g1725 299 CDD homeodomain 102 158 IPR001356 GO:0003677
Psa1g1725 299 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 299 - -
Psa1g1725 299 Pfam Homeodomain 102 155 IPR001356 GO:0003677
Psa1g1725 299 ProSitePatterns 'Homeobox' domain signature. 132 155 IPR017970 GO:0000981|GO:0006355
Psa1g1725 299 SMART HOX_1 100 161 IPR001356 GO:0003677
Psa1g1725 299 SUPERFAMILY Homeodomain-like 93 159 IPR009057 -
Psa1g1725 299 Pfam Homeobox associated leucine zipper 157 197 IPR003106 GO:0006355|GO:0043565
Psa1g1725 299 Gene3D - 100 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1725 Psa-Chr1 122600402 122604346 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1725 5 292 Homeobox Transcription Factor Family AT5G15150 50.809 3.38e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Psa1g1725 Homeodomain 4.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1725 K09338 - gmx:100790803 401.749