Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1708 ATGGCAAATGGTGATGATTGGTATCACCAACGTCACTTAGTTTCACCAGCATTCATGGGAGAAAAACTTAAGAGTTATGCTGTACACATGATGGAATGCACTAAAGAGATGCTTGAATCACTTCAGAATGTAACATTGGAGTGTGACAAAAAAGAGGTTGAAATTGGAGAATATTTCACAAAACTCACTGCAGATATTATTTCAAGAACTGAGTTTGGTACAAATTATGAAATGGGAAAACAAATATTTCACCTTCTAACACAATTACAAGCTCTTTGTGCTCAAGCAACTAAAAATCTTTGGTTTCCTGGAAGCAGGTTTTTTCCTAGTACTTATAACAGAGAGATCAAGTCATTGAAGATGGAAGTGGAGAGACTCTTGATGGAGATAATACAAAGTAGAAAAGATTGTGTGAAAATGGGAAGAAGCACTTCTTATGGGAATGACTTATTGGGAATGCTTTTAGATGAATTTCAAAAGAGTGGTAACCTAAACCTACAATTGGTAATGGATGAGTGCAAAACATTCTTCTTTGCTGGACATGAAACAACTGCACTCTTACTCACATGGACTACTATGCTGTTAGCTAGCAATCCAACTTGGCAAGAAAAAGTTAGAAGTGAAGTTAAAGAGATTTTCAATCAAGGAATGCCTTCTATTGATCAACTCTCTAAGCTCAATGTGATGCACATGGTAATCAATGAATCAATGAGACTCTATCCTCCAGCAACCCTACTTCCTAGAATGGCTTTTCAAGACATTGTTTTAGGTGATCTTTATATTCCTAAAGGCTTATCAGTTTGGATTCCAGTTTTGGCTATTCATCATAGTGAAGAATTAACCCCTTTTCTACGTTTACTTAAGTTAGGTGTTTCTAAACGATCAAAATCATTCATGCCTGGTCGTTTCTTACCTTTTGCTTCTGGCCCAAGAAACTGTGTTGGACAGTCATTTGCTATGATGGAAGCTAAGCTTATATTGGCAATGTTGGTCTCTAGGTTTAGCTTCACCATTTCAGAGAATTATAATCATGCACCAATCACTGTCCTTACTATTAAGCCTAAATATGGTGTGCAAATTTGTCTGAAGCCTTTAACTTGA 1101 0.3642 MANGDDWYHQRHLVSPAFMGEKLKSYAVHMMECTKEMLESLQNVTLECDKKEVEIGEYFTKLTADIISRTEFGTNYEMGKQIFHLLTQLQALCAQATKNLWFPGSRFFPSTYNREIKSLKMEVERLLMEIIQSRKDCVKMGRSTSYGNDLLGMLLDEFQKSGNLNLQLVMDECKTFFFAGHETTALLLTWTTMLLASNPTWQEKVRSEVKEIFNQGMPSIDQLSKLNVMHMVINESMRLYPPATLLPRMAFQDIVLGDLYIPKGLSVWIPVLAIHHSEELTPFLRLLKLGVSKRSKSFMPGRFLPFASGPRNCVGQSFAMMEAKLILAMLVSRFSFTISENYNHAPITVLTIKPKYGVQICLKPLT* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1708 366 Coils Coil 116 136 - -
Psa1g1708 366 Gene3D Cytochrome P450 1 365 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g1708 366 PRINTS P450 superfamily signature 179 196 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g1708 366 PRINTS P450 superfamily signature 231 242 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g1708 366 PRINTS P450 superfamily signature 304 313 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g1708 366 PRINTS P450 superfamily signature 313 324 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g1708 366 PANTHER CYTOCHROME P450 FAMILY PROTEIN 1 361 - -
Psa1g1708 366 SUPERFAMILY Cytochrome P450 2 364 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g1708 366 Pfam Cytochrome P450 2 349 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g1708 366 PANTHER CYTOCHROME P450 FAMILY MEMBER 1 361 - -
Psa1g1708 366 PRINTS E-class P450 group I signature 62 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g1708 366 PRINTS E-class P450 group I signature 168 185 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g1708 366 PRINTS E-class P450 group I signature 188 214 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g1708 366 PRINTS E-class P450 group I signature 303 313 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Psa1g1708 366 PRINTS E-class P450 group I signature 313 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1708 Psa-Chr1 120162809 120166457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1708 1 226 Cytochrome P450 AT5G38450 67.241 9.36e-90 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1708 K10717 - gmx:100812567 563.533