Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1700 ATGAGCAATGAGAATGGACAGAAACCCCCACCGTCGATACTGGTTGGTCGATTCAAGGCTTTGTTGAAGCAACGTGAAGATGACCCAAGGCTGAGAAATTCGCAACCTTCAACAGAAGAAATTGTTCAGATTTACGAGTCGTTATTGGCTGAACTCACGTCTAATGTGAAACCTATCATCACTGATCTTACAATCATTGCTGAACAACATAGGGAACATGCTAGAGGAATCGCTTATGCTATTTGCGCTCGTATTCTCGAGGTGTCTGCAGATCATAAGCTTCCTTCACTCTATCTCTTGGACAGTGTTGTGAAGAATGTTGGCCAGGAATATGTTCGATACTTCTCATTACGTCTACCCGAAGTTTTCTGCGAGGCATACAGACAGGTTAATCCAAGTTTGCATTCTGCCATGCGACATCTCTTTAGTACCTGGTCAAAAGTTTTCCCTCCCTCTGTCTTACGGAAGATTGAAGTGCAATTGCAATTTTCTCCAGCAGTTAATAATCAACCATCAAGTGTTAATCCCCTCAGGGCTTCTGAATCTCCTCGGCCAACTCATGGGATACATGTTAACCCAAAATACATAAGACAAATGGAACACTCTACTTCAATTATGGATAGTGTTGTGGGTGAAAGGTTAGGTTCACCAGGAACTGTAGGAAATGGAAACTTTGGCCTTGCAGCTAATAAGGTTCATCAATTTGTGCCAAATAGGGTTGGCAAATCCTCTTCACCATCAAGAGTTGAACTTGATAGGCATATGCCCACATATATGGATGAATATGTAGTTGACAATTCTGCTGGCAGGACAGTTGAGAGAGAATCTCCTCATCACGCCGTTGATTATAGACTAGTTAAAGGATTAGGTAGAGAAGAAGAGTTGCGTGATTGGCCGCGAAAGCAGTTTTCTGGTGATGGTCCAAAGAGATTTCCAACTTCTGTGACGTACAGTCTTAGTAACGGACAACCACGCCAAAATCCAAGAGCTCTAATTGATGCCTATGGTAGTGACAAAAGCCAAGAAACTTCTGGCAGTAAGCCTTTGTTAGTTGAGCGGCTGGATAGAAATGGCATGGATAAGGTTGTGACAACATCATGGCAGAACACTGAAGAGGAGGAATTTGATTGGGAAGATATGAGTCCAACACTAGTGGACCATAGTAGAAACAATGGTTTCCTGCAACCAACTAGTGGTTTTTCCTCAGAAAAGCCTGTTACTCTTTCAGGCAGTGCAACTTCTTCAGTGTCAAGGATGTTTCATGGTCTCAAGTCTAATATGGAGTACCGTCCACCAGTTTTGCCGGGAACTTTTGAAATAAGGAACTCTATAAATGCGCTTGCTCCTCGTCCTCCCAGCTTAAATCCTACATTTCCATTTAAGAATCCTGTTAGGAATCCATTTGAATCAATAAATGCTAATAGTACCATTGTGAGTCATGGTCTAAATATACCATTTCCGATCCATGAACAATCGTTGCCCGGTGCTGAGAATAATGACATCAGTAAAAGAAACCAGTATCAGTTACCTAATCAGCTAGCTGGTCTGATTTCATCTAATCCGCAAAACCCTGTACAAGCACCTCAGTTACAGTTTTTTCCATCTCAGGATCCAGCAGCATCACAATTTAGTTATAGGCCCTCTTTGCAAGGACATGGTGCTGCTATAAGTACCCCCATGTCAAATGCCCGACCTGTTATGCCATTCCCTTTGCCTGGCCAAAGAACTGCAAACAACTCTTTTCATTTCCAGGGAGGACCGTTGCGGCCTTTACCCCCAGCCGGTCCACATGCTCCATCCCAGATGCTGCCTCATCCCAATCCTAGTCCTTTTGTTTCAAGCCAACAGCCCACAGTTGGATATTCTAATTTGATTAATTCACTCATGGCCCAAGGTGTAATCTCGTTGGCTAATCAAGCCCCTGCACAAGATTTTGTTGGAATTGAGTTTGATCCAGATATTCTGAAGGTCCGTCACGATTCTGCAATCAAAGCCTTATATGGTGATCTTCCTAGACAATGCACAACTTGTGGCCTCCGTTTTAAATCCCAAGATGAGCACAGCAGTCACATGGATTGGCATGTGACTAAGAACCGTATGTCTAAAAACCGTAAGCAAAAACCCTCTCGCAAGTGGTTTGTGAGTGAGACGATGTGGCTTAGTGGTGCAGAGGCATTGGGAGCTGAATCAGCTCCAGGGTTTTTGCCAACCGAGACTACTGAGGAAAAGAAAGAAGATGAAGAGTTGGCGGTTCCTGCTGAAGAGGACCAAAATACATGTGCATTATGTGGAGAGCCTTTTGATGAGTTTTACAGTGATGAAACGGAGGAGTGGATGTATAGAGGAGCTGTATACCTTAACGCGCCTAACGGAATAACAGCAGGCATGGACAGGTCGCAGTTAGGCCCCGTTATCCATGCTAAATGCAGATCTGAATCTACTACCACCCCGTCTGAAGATTTTGTGATGGATGAAGGGGGCACCTATGAAGAAGGAAATGAAAGAAAACGAATGCGGGTCTGA 2523 0.4388 MSNENGQKPPPSILVGRFKALLKQREDDPRLRNSQPSTEEIVQIYESLLAELTSNVKPIITDLTIIAEQHREHARGIAYAICARILEVSADHKLPSLYLLDSVVKNVGQEYVRYFSLRLPEVFCEAYRQVNPSLHSAMRHLFSTWSKVFPPSVLRKIEVQLQFSPAVNNQPSSVNPLRASESPRPTHGIHVNPKYIRQMEHSTSIMDSVVGERLGSPGTVGNGNFGLAANKVHQFVPNRVGKSSSPSRVELDRHMPTYMDEYVVDNSAGRTVERESPHHAVDYRLVKGLGREEELRDWPRKQFSGDGPKRFPTSVTYSLSNGQPRQNPRALIDAYGSDKSQETSGSKPLLVERLDRNGMDKVVTTSWQNTEEEEFDWEDMSPTLVDHSRNNGFLQPTSGFSSEKPVTLSGSATSSVSRMFHGLKSNMEYRPPVLPGTFEIRNSINALAPRPPSLNPTFPFKNPVRNPFESINANSTIVSHGLNIPFPIHEQSLPGAENNDISKRNQYQLPNQLAGLISSNPQNPVQAPQLQFFPSQDPAASQFSYRPSLQGHGAAISTPMSNARPVMPFPLPGQRTANNSFHFQGGPLRPLPPAGPHAPSQMLPHPNPSPFVSSQQPTVGYSNLINSLMAQGVISLANQAPAQDFVGIEFDPDILKVRHDSAIKALYGDLPRQCTTCGLRFKSQDEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSETMWLSGAEALGAESAPGFLPTETTEEKKEDEELAVPAEEDQNTCALCGEPFDEFYSDETEEWMYRGAVYLNAPNGITAGMDRSQLGPVIHAKCRSESTTTPSEDFVMDEGGTYEEGNERKRMRV* 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1700 840 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 8 815 - -
Psa1g1700 840 SMART 558neu5 40 162 IPR006569 -
Psa1g1700 840 ProSitePatterns Zinc finger C2H2 type domain signature. 674 694 IPR013087 -
Psa1g1700 840 ProSiteProfiles CID domain profile. 37 165 IPR006569 -
Psa1g1700 840 MobiDBLite consensus disorder prediction 812 840 - -
Psa1g1700 840 Pfam CID domain 46 156 IPR006569 -
Psa1g1700 840 Gene3D - 30 162 IPR008942 -
Psa1g1700 840 SUPERFAMILY ENTH/VHS domain 36 162 IPR008942 -
Psa1g1700 840 CDD CID_Pcf11 45 162 - -
Psa1g1700 840 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 8 815 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1700 Psa-Chr1 119086177 119091735 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1700 14 839 C2H2 Transcription Factor Family AT4G04885 45.528 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa1g1700 CID 8.8e-13 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1700 K14400 - fve:101292683 703.745