Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1699 ATGGCTGAAGCTTCTGATGTGAAAGCTTCATTGCCTGAAGCAGAGAAGAAGAAGGAACAAAGTTTACCCTTTTATCAGCTTTTCTCATTTGCTGATAAATATGATTGGATTCTTATGATCTCTGGAAGTATTGGTGCCATCATTCATGGCTCTTCTATGCCTGTTTTTTTTCTTCTGTTTGGTCAAATGGTTAACGGTTTTGGTAAGAACCAAATGGATTTGAAGAAAATGACTGATGAAGTTTCCAAGTATGCACTTTACTTTGTGTACCTTGGCCTTGTTGTTTGTATATCATCTTATGCAGAGATTGCATGTTGGATGTATACTGGGGAGAGACAAGTTAGCACCTTGAGGAAGAAGTATTTAGAGGCAGTTCTAAAACAAGATGTTGGTTTCTTTGATACAGATGCAAGAACTGGAGATATAGTTTTCAGTGTCTCAACTGATACACTATTAGTCCAAGATGCTATAAGTGAGAAGGTTGGGAATTTCATACATTATCTATCAACTTTTCTAGCCGGACTTGTGGTTGGTTTTGTGTCAGCGTGGAGATTAGCACTTCTTAGTGTTGCCGTGATTCCGGGAATTGCTTTTGCTGGTGGTTTATATGCCTATACACTCACCGGACTTACATCGAAGAGTCGCGAATCATATGCGAATGCTGGAATAATTGCTGAACAGGCGATTGCTCAAGTTCGAACGGTTTACTCTTATGTTGGTGAGAGTAAGGCGTTGAATTCTTATTCCGATGCAATTCAAAACACTTTGAAGCTTGGATACAAGGCAGGAATGGCCAAAGGCTTAGGCTTAGGTTGCACATACGGTATAGCTTGCATGTCGTGGGCGCTAGTTTTTTGGTATGCCGGTGTTTTTATCAGGAACGGACAAACCGATGGAGGCAAGGCATTCACAGCTATTTTCTCGGCCATTGTCGGTGGAATGAGTTTGGGTCAGTCGTTTTCGAACTTAGGCGCTTTTAGCAAAGGCAAAGCAGCCGGATACAAATTGATGGAAATCATTAAGCAGAGACCAACCATTGTCGAAGATCAATTGGAAGGAAAGTGCTTAGCCGAGGTTAATGGAAACATTGAATTTAAGGATGTTAGCTTTAGCTATCCGTCAAGACCGGACGTGATGATTTTTCGGAATTTCTCGATCTTTTTTCCTGCCGGTAAAACCGTTGCGGTTGTTGGTGGTAGTGGATCCGGAAAGAGTACCGTTGTTTCCTTAATTGAAAGGTTCTATGATCCTAATGAAGGTCAGGTTCTTCTTGATAATGTGGACATTAAGACGCTACAACTAAAATGGTTACGCGATCAAATCGGTTTGGTGAATCAAGAGCCTGCATTATTTGCAACTACCATTCTCGAAAACATACTCTACGGAAAATCCGATGCAACAATAGACGAAGTCGAAGCCGCAACTTCTGCTGCAAATGCTCATAGCTTCATTACATTGCTTCCTAATGGCTACAACACTCAGGTTGGAGAGCGAGGAGTTCAATTATCCGGGGGACAAAAGCAAAGGATTGCAATTGCGAGGGCTATGTTGAAAAATCCGAAGATCCTTCTCTTAGACGAAGCAACTAGTGCTCTTGACGCGGGATCCGAAAGCATTGTTCAAGAGGCGCTAGACCGTCTCATGGTTGGTAGAACAACAGTCGTCGTTGCTCATCGATTATCAACCATTAGAAACGTGGACACCATTGCAGTTATTCAACAAGGAGTAGTCGTCGAGACAGGAACACACGAAGAACTTTTTGCCAAGGGAGGAACCTACGCCTCTCTAATTCGATTCCAAGAAATGGTTGGAAATAGAGACTTCTCAAACCCTTCAACTCGCCGGAACCGCTCTTCGCGGTTAAGCCATTCGCTTTCAACAAAGTCTTTAAGCTTAAGGTCAGGAAGCTTGAGAAACTTGAGCTACCAATACAGCACCGGAGCCGACGGCCGAATCGAGATGATCTCAAATGCCGAAACCGATAAGAAGAATCCAGCTCCAGACGGATACTTCTTCCGGTTACTCAAGATGAACGCACCCGAATGGCCTTACTCGATAATGGGCGCCGTTGGATCGATTCTTTCTGGATTCATCGGTCCAACTTTTGCTATTGTTATGAGCAACATGATTGAAGTCTTTTACTATAGTAACTATGCATCCATGGAGAAGAAAACTAAAGAATATGTTTTCATATACATCGGTGCCGGAATCTATGCCGTCGGTGCTTACTTGATTCAACATTACTTTTTTAGTATCATGGGAGAAAATCTCACCACAAGGGTCAGAAGAATGATGCTTGCAGCGATTTTGAGGAATGAAGTTGGATGGTTCGACGAGGAGGAGCACAACTCGAGTCTTGTTGCGGCTCGCCTTGCCACGGATGCGGCTGATGTGAAGTCAGCCATTGCTGAGAGGATATCAGTCATTTTGCAAAACATGACCTCTCTTCTCACTTCTTTCATTGTTGCTTCTTTTGAATGGAGGGTTTCTTTGCTCATCCTTGGAACTTTCCCTCTTCTTGTTCTAGCAAATTTTGCTCAGCAACTATCTCTCAAAGGGTTCGCCGGAGACACTGCGAAGGCGCATGCGAAGACAAGCATGATTGCAGGAGAAGGAGTAAGCAACATCAGAACAGTTGCCGCATTCAATGCTCAAAACAAGATGCTGTCCATCTTTTGCCACGAGTTACGTGTTCCGCAGAGCCAGAGTCTGCGTCGAAGTTTGACATCGGGGCTCTTGTTCGGTTTGTCTCAGTTAGCCCTTTACGCGTCAGAAGCTCTCATTCTATGGTATGGTGCACATTTAGTGAGCAAAGGCCTATCGACGTTTTCTAAAGTCATCAAGGTGTTTGTTGTCTTGGTGATCACGGCGAATTCTGTAGCGGAAACGGTTAGTCTTGCTCCGGAGATTATCCGCGGTGGTGAAGCTGTTGGTTCGGTTTTCTCAATTCTTGACCGGTCAACTCGAATTGACCCTGATGATCCTGATGCTGAAATGGTTGAATCGGTTCGTGGAGAGATTGAGCTTAGACATGTTGATTTCGCGTATCCTTCTAGGCCGGATGTGATGGTGTTCAAAGATTTCAGCCTTAGAATCCGCGCAGGTCAGAGTCAAGCTCTTGTTGGGGCGAGTGGTTCCGGGAAGAGTTCTGTTATTGCATTGATAGAACGATTCTATGACCCATTTGTCGGTAAAGTAATGATTGATGGAAAGGACATTAGGAAGTTGAATTTAAAGTCTTTGAGGCTTAAAATCGGTTTAGTCCAACAAGAACCCGCATTGTTCGCGTCCAGCATTTTCGACAACATTGCATACGGCAAAGAAGGCGCAACAGAAGCCGAGGTTATCGAAGCGGCTCGTGCAGCCAATGTGCACGGATTTGTAAGTGGTTTACCCGAAGGTTACAAGACACCGGTCGGCGAACGGGGCGTTCAACTCTCTGGCGGTCAAAAGCAAAGGATCGCCATTGCAAGAGCTGTTTTAAAGGATCCCGCAATACTTTTACTCGACGAGGCGACAAGTGCACTCGACGCAGAATCCGAATGCGTTCTACAGGAAGCCTTAGAGAGGCTAATGAGGGGTCGAACCACCGTGCTCGTGGCTCATCGTTTGTCAACCATTCGAGGCGTCGATTGCATTGGCGTCGTGCAAGACGGACGCATTGTTGAACAAGGCAGTCATTCTGAACTCATAAGCAGACCAGAAGGAGCTTATTCTAGACTCTTGCAGCTTCAACATCATCACATATGA 3750 0.4464 MAEASDVKASLPEAEKKKEQSLPFYQLFSFADKYDWILMISGSIGAIIHGSSMPVFFLLFGQMVNGFGKNQMDLKKMTDEVSKYALYFVYLGLVVCISSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQRPTIVEDQLEGKCLAEVNGNIEFKDVSFSYPSRPDVMIFRNFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNEGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTILENILYGKSDATIDEVEAATSAANAHSFITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTIAVIQQGVVVETGTHEELFAKGGTYASLIRFQEMVGNRDFSNPSTRRNRSSRLSHSLSTKSLSLRSGSLRNLSYQYSTGADGRIEMISNAETDKKNPAPDGYFFRLLKMNAPEWPYSIMGAVGSILSGFIGPTFAIVMSNMIEVFYYSNYASMEKKTKEYVFIYIGAGIYAVGAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLLTSFIVASFEWRVSLLILGTFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKMLSIFCHELRVPQSQSLRRSLTSGLLFGLSQLALYASEALILWYGAHLVSKGLSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFSILDRSTRIDPDDPDAEMVESVRGEIELRHVDFAYPSRPDVMVFKDFSLRIRAGQSQALVGASGSGKSSVIALIERFYDPFVGKVMIDGKDIRKLNLKSLRLKIGLVQQEPALFASSIFDNIAYGKEGATEAEVIEAARAANVHGFVSGLPEGYKTPVGERGVQLSGGQKQRIAIARAVLKDPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELISRPEGAYSRLLQLQHHHI* 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1699 1249 CDD ABC_MTABC3_MDL1_MDL2 363 600 - -
Psa1g1699 1249 ProSitePatterns ABC transporters family signature. 1146 1160 IPR017871 GO:0005524
Psa1g1699 1249 Gene3D ABC transporter type 1, transmembrane domain 26 973 IPR036640 GO:0005524|GO:0016021
Psa1g1699 1249 Gene3D ABC transporter type 1, transmembrane domain 974 996 IPR036640 GO:0005524|GO:0016021
Psa1g1699 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1009 1243 IPR003439 GO:0005524
Psa1g1699 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 600 IPR027417 -
Psa1g1699 1249 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 15 1247 IPR039421 -
Psa1g1699 1249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 996 1245 IPR027417 -
Psa1g1699 1249 CDD ABC_MTABC3_MDL1_MDL2 1007 1245 - -
Psa1g1699 1249 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 336 - -
Psa1g1699 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 42 328 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g1699 1249 SUPERFAMILY ABC transporter transmembrane region 27 348 IPR036640 GO:0005524|GO:0016021
Psa1g1699 1249 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524
Psa1g1699 1249 SUPERFAMILY ABC transporter transmembrane region 667 986 IPR036640 GO:0005524|GO:0016021
Psa1g1699 1249 Pfam ABC transporter transmembrane region 686 956 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g1699 1249 Pfam ABC transporter transmembrane region 44 313 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g1699 1249 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524
Psa1g1699 1249 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 972 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Psa1g1699 1249 Gene3D - 997 1246 IPR027417 -
Psa1g1699 1249 Gene3D - 353 601 IPR027417 -
Psa1g1699 1249 Pfam ABC transporter 1026 1174 IPR003439 GO:0005524
Psa1g1699 1249 Pfam ABC transporter 382 530 IPR003439 GO:0005524
Psa1g1699 1249 PANTHER ABC TRANSPORTER TAP-LIKE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 15 1247 - -
Psa1g1699 1249 SMART AAA_5 1034 1220 IPR003593 -
Psa1g1699 1249 SMART AAA_5 390 576 IPR003593 -
Psa1g1699 1249 MobiDBLite consensus disorder prediction 607 626 - -
Psa1g1699 1249 CDD ABC_6TM_Pgp_ABCB1_D2_like 675 990 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1699 Psa-Chr1 118898224 118905763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1699 13 1245 Calmodulin-binding Proteins AT2G36910 53.828 0.0 1342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1699 K05658 - gmx:100797124 2248.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1699 1 118898224 118905763 Psa1g1699 1 118898224 118905763 ECH