Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1694 ATGGAAGAAAGAACTGAGATGGATAATATCAAGGTTGATGATTTGATGCCTGGTTTTCGTTTTCATCCCACTGATGAAGAACTTGTTGCTTTTTATCTCAAGAGAAAAGTTCAACAAAAATCTCTTCCTATTGAACTTATTAAGCAAGTTGATATTTACAAATATGATCCATGGGACCTTCCAAAGCTTGCAAGTAGTGGTGAGAAAGAATGGTATTTTTATTGTCCAAGGGACAGAAAATACAGAAACAGTTCAAGGCCTAATAGGGTTACAAGAGCTGGATTTTGGAAGGCCACAGGAACTGATAGACCTATTTATTCATCTGATGGAAAATGCATTGGTTTGAAGAAATCACTTGTTTTCTATAAAGGTAGAGCTGCCAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTAGGTTACCTTCCATTTCCATTTCAGATTCTTCAACCTCTCCTCCCAAAAAATTCTCTGACAAAAGTTTCTCTCCAAATGATTCATGGGCAATTTGTAGGATTTTCAAGAAAACAAATTCTCTTTCCATGGTGCAAAAAGCATTATCTCATCCTTGGATCTCTCAATTACCGGGAAACATGGTATCTGAATTACTCACACAAACTACAAACATCAATCAATTCTATTCACAAAATAATATCTCAGGTACAATAGAACAAGCATCATCAGCCACAACAAACGTACAAATCAACGAGCGTGAGCTACAACAAGTCACCAACACCAACTTCTCAGCTTCAGATTTTCCAACATACAAACCTATCAACAACATTAACACAATTTCCAAGTCCTCACAAATTTCTCTTCCTAATGGAGACATTGTTGATAACCTAATGTTCTACAATCTTGAAGCCAATGGTTCAACAAAGTGCACAATTGATAATGATTGTTCAATTCTTTCAAACACAAACTATATTGCTTTTGAAGACACAAACAATCCATATAATGGATTCTCAATAAGTCTACCTGAAGATATGCAACAACCAAACATTCAAGATCAAATGCAGCTTAATAATCAATGGGAAAATCTAGGAAGAACAATTGAATTTCCCTTCAATTTGTCTCCAAATTTTGATGCTTTGAGGACTAATGTTACATGGGACATACCACCTTGTACTAGTGAAATTTCCACAACTTATGTCACTAGTAAATGTTACACTTAG 1176 0.3537 MEERTEMDNIKVDDLMPGFRFHPTDEELVAFYLKRKVQQKSLPIELIKQVDIYKYDPWDLPKLASSGEKEWYFYCPRDRKYRNSSRPNRVTRAGFWKATGTDRPIYSSDGKCIGLKKSLVFYKGRAAKGTKTDWMMHEFRLPSISISDSSTSPPKKFSDKSFSPNDSWAICRIFKKTNSLSMVQKALSHPWISQLPGNMVSELLTQTTNINQFYSQNNISGTIEQASSATTNVQINERELQQVTNTNFSASDFPTYKPINNINTISKSSQISLPNGDIVDNLMFYNLEANGSTKCTIDNDCSILSNTNYIAFEDTNNPYNGFSISLPEDMQQPNIQDQMQLNNQWENLGRTIEFPFNLSPNFDALRTNVTWDIPPCTSEISTTYVTSKCYT* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1694 391 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Psa1g1694 391 ProSiteProfiles NAC domain profile. 15 176 IPR003441 GO:0003677|GO:0006355
Psa1g1694 391 SUPERFAMILY NAC domain 11 176 IPR036093 GO:0003677|GO:0006355
Psa1g1694 391 Gene3D NAC domain 24 181 IPR036093 GO:0003677|GO:0006355
Psa1g1694 391 PANTHER NAC DOMAIN-CONTAINING PROTEIN 94-RELATED 1 389 - -
Psa1g1694 391 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1694 Psa-Chr1 118183068 118185616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1694 1 275 NAC Transcription Factor Family AT1G26870 57.439 8.06e-99 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa1g1694 NAM 6.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1694 - - mtr:MTR_6g011860 687.567