Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1671 ATGATGGAGGTTTTAACAACAACAACAACCGCCACAAACACTACTCCTTTGACAACAATTTCAAAACCATCAGAACCCGATTCAGAAAACCCGACCCGAATCCAACAACAACAACCCGTTAACACAACAACCTCAAACATAACAAAGCCTCTGTCTTTTTCAAATGGGGTTCTTAAACGCCACCATCCCAACACTCACAACCACCACAACAACAACGTTGTTGCTGTTACTTACAAAGAATGTCTCAAAAACCACGTGGCAACTTTAGGTGGTCACGCACTAGACGGTTGTTGTGAATTCATGCCGTCACCAACCGCCACCTCCGACGACCCCGCTTCCATAAAATGCGCCGCTTGCGGATGTCACCGGAATTTCCACCGTCGTGAACCAGAAGAACCGATTTCCACCGTTTTTGAATATCAACCTCACCACCGCCACCACCCACCACCTCCGCCGTTGTTTCAGTCCCGTTCGCCAAGCTCCCCGTCTCCACCGCCGATCTCATCATACCCATCAGCTCCACATATGCTCTTAGCACTCTCTGGTGCCGGAGTCGGACTCTCGATCCCGCCGGAAAACACAGCAGCGCCGTTAAACCTTGGTTCTCCGATGGGAGCTAGTAGAAAAAGATTCAGAACAAAATTCTCACAAGAGCAGAAGGATAAGATGCATGAATTTGCTGAGAGACTTGGGTGGAAGATGCAGAAGAGAGATGAAGAAATGGTTAATGGATTTTGCAATGAAGTTGGTGTTGATAGAAGTGTTCTCAAAGTCTGGATGCATAACAATAAGAACACTTTGGGAAGAAAATTATCAGATCATGGTAATGGTGACGGCGACGCCGTAAGATCCGCCGTAGACGGTGTCTCCGATGGTGGTTTTGGTGCTCATGAGAATGATAATGATGGGATTAATGTTGCTGCTTCCGTTTTTACAAAGATAGCTATGTCCTATGATTACTTTAAGAATCTTAATCCTACTAATTTTAAACATAATCTCATTTGA 1005 0.4557 MMEVLTTTTTATNTTPLTTISKPSEPDSENPTRIQQQQPVNTTTSNITKPLSFSNGVLKRHHPNTHNHHNNNVVAVTYKECLKNHVATLGGHALDGCCEFMPSPTATSDDPASIKCAACGCHRNFHRREPEEPISTVFEYQPHHRHHPPPPPLFQSRSPSSPSPPPISSYPSAPHMLLALSGAGVGLSIPPENTAAPLNLGSPMGASRKRFRTKFSQEQKDKMHEFAERLGWKMQKRDEEMVNGFCNEVGVDRSVLKVWMHNNKNTLGRKLSDHGNGDGDAVRSAVDGVSDGGFGAHENDNDGINVAASVFTKIAMSYDYFKNLNPTNFKHNLI* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1671 334 Gene3D - 199 268 - -
Psa1g1671 334 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 6 271 - -
Psa1g1671 334 MobiDBLite consensus disorder prediction 1 41 - -
Psa1g1671 334 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 78 129 IPR006456 -
Psa1g1671 334 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 6 271 - -
Psa1g1671 334 SUPERFAMILY Homeodomain-like 199 269 IPR009057 -
Psa1g1671 334 MobiDBLite consensus disorder prediction 141 168 - -
Psa1g1671 334 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 208 265 IPR006455 -
Psa1g1671 334 MobiDBLite consensus disorder prediction 147 168 - -
Psa1g1671 334 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 77 129 IPR006456 -
Psa1g1671 334 Pfam ZF-HD protein dimerisation region 76 130 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1671 Psa-Chr1 116205099 116208541 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1671 2 264 ZF-HD Transcription Factor Family AT5G15210 51.471 2.62e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Psa1g1671 ZF-HD_dimer 4.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1671 - - gmx:100814730 317.775
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1671 1 116205099 116208541 Psa1g1671 1 116205099 116208541 ECH