Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1669 ATGGTGAGACCACCATGTTGTGATAAAGAAGGTGTGAAGAAAGGTCCTTGGACTCCTGAAGAAGACATCATTTTGGTTTCTTATATTCAAGAACATGGTCCTGGAAATTGGAAAGCTGTTCCTACTAATACTGGTTTGTTAAGGTGTAGCAAGAGTTGCAGACTTAGATGGACAAATTATCTAAGGCCAGGAATCAAAAGGGGTAATTTCACTGATCAAGAGGAGAAAATGATTATCCATCTTCAAGCTCTTTTAGGAAACAGATGGGCTGCAATAGCTGCATACCTTCCACAAAGAACAGACAATGACATAAAGAATTATTGGAACACTTATTTGAAGAAAAAGCTCAAGAAATTAGAAACAAGTACTTCTTCTGAATCATGTTTGGGACATGATGATTTCTCAGTTTCTCAACCAATTGCTAGAGGACAATGGGAAAGAAGACTTCAAACCAACATTCACATGGCCAAAAAAGCACTTAGTGAAGCTCTTTCACCAGAAAAAACCACTTCTACCAACTTATGTTCACCTCTTGAATCTAGCTTTTCTAATGAAGCTTCTTTTTGTTCAACAAAACCAACACAAACACAAACACAATCTTTGTGTTATGCTTCAAGTGCTGACAACATAGCTAGGTTGTTGAAAGGTTGGATGAAAAATAAACCAAAAGGGTCAAATGGTAATAACACAAAAGTGATGCAAAATTATGAAACAAGTGCTTCTAGTGAAGGGATTGAAAAAGGGTCATCAACAATTTCTGAGAATTTTGAGTCTTTGTTTGGTTATGAGGATTTTGATTCTTCAAATTCAGATTCTACTACACTTTTTCAAGATGAGAGCAAACCTCAAATTGGTGATAGTGAAATTATGCCATTCTCTTTGCTTGAGAAATGGCTTCTAGATGATGGTGCTTGTCAAGAGAAAGTTAATCTTAGTGAAATTAATTGCATGTTTTGA 957 0.3584 MVRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWKAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKKLKKLETSTSSESCLGHDDFSVSQPIARGQWERRLQTNIHMAKKALSEALSPEKTTSTNLCSPLESSFSNEASFCSTKPTQTQTQSLCYASSADNIARLLKGWMKNKPKGSNGNNTKVMQNYETSASSEGIEKGSSTISENFESLFGYEDFDSSNSDSTTLFQDESKPQIGDSEIMPFSLLEKWLLDDGACQEKVNLSEINCMF* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1669 318 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 312 - -
Psa1g1669 318 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Psa1g1669 318 CDD SANT 16 61 IPR001005 -
Psa1g1669 318 Gene3D - 13 66 - -
Psa1g1669 318 Gene3D - 68 130 - -
Psa1g1669 318 CDD SANT 69 111 IPR001005 -
Psa1g1669 318 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Psa1g1669 318 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Psa1g1669 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Psa1g1669 318 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 312 - -
Psa1g1669 318 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Psa1g1669 318 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Psa1g1669 318 SMART sant 66 114 IPR001005 -
Psa1g1669 318 SMART sant 13 63 IPR001005 -
Psa1g1669 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1669 Psa-Chr1 116041803 116044161 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1669 1 302 MYB Transcription Factor Family AT5G62470 51.429 1.99e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa1g1669 Myb_DNA-binding 4.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1669 K09422 - gmx:778078 404.445