Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1668 ATGAGGAAGAGACAAGTGGTTCTGAGAAGATCAGAGGAACCACAAAGAAGTGTTGTGAAATATGGAGAGTGTCAGAAGAATCATGCAGCAAATGTTGGAGGCTATGCTGTTGATGGTTGCAGAGAGTTCATGGCAAATGGTGAAGAAGGAACAGATGGAGCTCTCACTTGTGCTGCTTGTGGTTGTCACAGAAACTTTCACAAAAGAGAGTTAGTTGAAACTGAATCTGTTTCTGAATGTTCAAATGGTACTTGA 255 0.4157 MRKRQVVLRRSEEPQRSVVKYGECQKNHAANVGGYAVDGCREFMANGEEGTDGALTCAACGCHRNFHKRELVETESVSECSNGT* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1668 84 Pfam ZF-HD protein dimerisation region 19 71 IPR006456 -
Psa1g1668 84 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 81 - -
Psa1g1668 84 PANTHER MINI ZINC FINGER PROTEIN 3 16 81 - -
Psa1g1668 84 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 20 70 IPR006456 -
Psa1g1668 84 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 21 70 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1668 Psa-Chr1 115665804 115667972 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1668 1 82 Zinc finger-homeobox gene family AT3G28917 64.211 1.27e-33 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Psa1g1668 ZF-HD_dimer 5.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1668 - - aprc:113868039 141.739
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1668 1 115665804 115667972 Psa1g1668 1 115665804 115667972 ECH