Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1662 ATGTCTCATCAAGGATTTCTAGTTCTTGGAATTATTCTCTGCATGATCTCTTATGTTTATGGTTATCGTTATCGTTATGGCAATAATCGCGGTTGGACTAATGCACACGCAACCTTCTATGGTGGCAGTGATGCTTCTGGCACAATGGGTGGGGCATGTGGATATGGAAACTTGTATAGTCAAGGTTATGGGACTAATACAGCAGCACTTAGCACTGCATTATTCAACAATGGTTTGAGTTGTGGTGCATGCTATCAAATTAAATGTGCTAATGACCCAAAATGGTGTCTCCATGGATCCATTGTTGTTACTGCCACTAATTTCTGTCCACCTGGTGGTTGGTGTGACCCTCCCAATCACCATTTTGATCTCTCTCAACCTGTTTTTCAACGCATTGCTCAATATAGAGCTGGTATTGTTCCTGTTGTTTATAGAAGGGTAAGCTGTAGAAAAAGAGGAGGAATAAGGTTCACAATTAATGGTCATTCTTACTTCAACCTAGTTCTTGTGACTAATGTTGGTGGTGCTGGTGATGTGCATTCTCTATCCATCAAAGGTTCAAGGACAAGATGGCAAGCCATGTCAAGAAATTGGGGACAAAATTGGCAGAGCAACTCTTTCATGAATGGACAAAGTCTTTCATTTTTAGTCACTACTGGTAATGGTCATCGTATTGTGTCATTTAATGTTGCCCCACCTAGTTGGTCCTTTGGACAAACCTACACTGGAAGACAGTTCCTCTACTAA 747 0.411 MSHQGFLVLGIILCMISYVYGYRYRYGNNRGWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACYQIKCANDPKWCLHGSIVVTATNFCPPGGWCDPPNHHFDLSQPVFQRIAQYRAGIVPVVYRRVSCRKRGGIRFTINGHSYFNLVLVTNVGGAGDVHSLSIKGSRTRWQAMSRNWGQNWQSNSFMNGQSLSFLVTTGNGHRIVSFNVAPPSWSFGQTYTGRQFLY* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1662 248 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Psa1g1662 248 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Psa1g1662 248 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Psa1g1662 248 PRINTS Expansin/Lol pI family signature 137 153 IPR007118 GO:0005576
Psa1g1662 248 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576
Psa1g1662 248 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Psa1g1662 248 SUPERFAMILY Barwin-like endoglucanases 31 172 IPR036908 -
Psa1g1662 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 243 IPR007117 -
Psa1g1662 248 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Psa1g1662 248 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Psa1g1662 248 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Psa1g1662 248 PRINTS Expansin signature 112 129 IPR002963 GO:0009664
Psa1g1662 248 PRINTS Expansin signature 129 142 IPR002963 GO:0009664
Psa1g1662 248 PRINTS Expansin signature 153 165 IPR002963 GO:0009664
Psa1g1662 248 PRINTS Expansin signature 165 186 IPR002963 GO:0009664
Psa1g1662 248 PRINTS Expansin signature 200 221 IPR002963 GO:0009664
Psa1g1662 248 PRINTS Expansin signature 229 245 IPR002963 GO:0009664
Psa1g1662 248 Gene3D - 21 150 IPR036908 -
Psa1g1662 248 Gene3D - 154 246 IPR036749 -
Psa1g1662 248 PANTHER EXPANSIN 8 246 - -
Psa1g1662 248 Pfam Expansin C-terminal domain 155 232 IPR007117 -
Psa1g1662 248 PANTHER EXPANSIN-A15 8 246 IPR002963 GO:0009664
Psa1g1662 248 SMART dpbb_1 67 144 IPR007112 -
Psa1g1662 248 SUPERFAMILY PHL pollen allergen 151 243 IPR036749 -
Psa1g1662 248 Pfam Lytic transglycolase 67 144 IPR009009 -
Psa1g1662 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 154 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1662 Psa-Chr1 115013202 115015594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1662 8 246 Expansin Gene Family AT2G03090 74.502 3.60e-135 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1662 K20628 - gmx:100799370 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1662 1 115013202 115015594 Psa1g1662 1 115013202 115015594 ECH
Psa2g2676 2 307543415 307546322 Psa1g1662 1 115013202 115015594 ECH