Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1650 ATGTGGATGGGTAAAGAAGACGAAGAAATGAAAGGTGAAATCGAAGAACGATTAATCAACGAAGAATACAAAATCTGGAAGAAAAACAGTCCCTTTCTCTACGATCTCGTCATCACCCACGCCCTAGAATGGCCTTCCCTCACCGTCGAATGGCTCCCGGACCGCCAAGAGCCACCGGGAAAAGATTACTCCCTTCAAAAACTCATCTTGGGAACCCACACTTCCGAAAACGAGCCCAATTACCTCATTAAACATCCTTCTAAACCTCCTCTTGATGGTTCTTGTAACCCTGATTTGAGGTTGAGAGGGCATAATACTGAAGGGTATGGTTTGTCTTGGAGTACTTTTAAACAAGGGCATTTGCTTAGTGGCTCTGATGATGCTCAGATTTGTTTGTGGGATATTAATGGTACTCCCAAGAATAAGTCTCTTGATGCTATGCAGATTTTTAAGGTACATGAAGGTGTTGTTGAGGATGTGGCTTGGCATTTGAGGCATGAGTATTTGTTTGGTTCTGTTGGGGATGATCAGTATTTGCTTATATGGGATCTTCGAACACCCTCTGTTACCAAGCCTGTTCAGTCTTGCATTGCTCATTCAAGTGAGGTACTCAAAGATGGACTTTCTACTTTGCATGCGCCGTATGCATATGGTTTTGCAATTATAATGCTCACTGTTCTTGTAAAAGCTGCCACATTTCCGCTGTCAAGAAAGCAGGTAGAATCTGCCATGGCTATGCGATCTTTGCAACCTCAAGTGAAGGCTATCCAGAAACAATATGCCGGGGATCAGAGCAATTGCACTTGGGGTTGGTTACGGGATGCGATTAAGTTTGTGAATCAGAAGGAAAATAGATTGGTTATGTTGATTTGGACTAAAACAGGTTTTAGTTGCCTAGTTATTCGCAGCTTTGAAGATTGTGCACAGGAAAAACAGGCATGTCTTCATTGTGTAAACAATGATTTGTTTCTCAGAACTGGCTTTGAGGAGGACAAGAATTTCCACGTTGCTTTAAATTCTATAATAGCCGGAAGGTATCATGTGACCGAGCATCTGGGATCTGCTGCTTTTAGCAAAGCTATACAGGCTCATGACCTGTATACTGGCATGGATGTCTGTGTTAAAATTATAAAGAATAACAAGGACTTTTTTGATCAAAGTCTTGATGAGATCAAGCTTCTCAAGTATGTCAATAAGCACGATCCCGCAGACAAGTATCACCTTCTTCGATTATATGATTATTTCTATTATCGAGAACATTTGTTAATAGTATGTGAACTACTTAAAGCAAACTTGTATGAGTTTCATAAATTTAATAGAGAATCAGGGGGTGAAGTTTACTTTACGATGCCGAGATTGCAGTCAATTACCATTCAGTGTTTGGAAGCACTTCAATTTTTGCATAGCCTTGGACTGATACATTGTGACTTGAAGCCAGAGAATATATTGGTTAAAAGTTATAGCAGATGTGAGATCAAGGTCATTGATCTTGGAAGTAGTTGTTTTGAGACAAACCACCTTTCTTCGTATGTTCAGTCAAGATCTTATCGTGCTCCTGAAGTTATTTTGGGACTTCCATATGACAAGAAGATTGATATCTGGAAAAAATATAACTATTTTTTATTAGCATTTATGACCACTGAATCTGAATCTGGTCAAACTATTCTAAAAGCTATTGGGGTTCTGAAAAGACAACATCTTTTTTGGTTTTAA 1713 0.3946 MWMGKEDEEMKGEIEERLINEEYKIWKKNSPFLYDLVITHALEWPSLTVEWLPDRQEPPGKDYSLQKLILGTHTSENEPNYLIKHPSKPPLDGSCNPDLRLRGHNTEGYGLSWSTFKQGHLLSGSDDAQICLWDINGTPKNKSLDAMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRTPSVTKPVQSCIAHSSEVLKDGLSTLHAPYAYGFAIIMLTVLVKAATFPLSRKQVESAMAMRSLQPQVKAIQKQYAGDQSNCTWGWLRDAIKFVNQKENRLVMLIWTKTGFSCLVIRSFEDCAQEKQACLHCVNNDLFLRTGFEEDKNFHVALNSIIAGRYHVTEHLGSAAFSKAIQAHDLYTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPADKYHLLRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHSLGLIHCDLKPENILVKSYSRCEIKVIDLGSSCFETNHLSSYVQSRSYRAPEVILGLPYDKKIDIWKKYNYFLLAFMTTESESGQTILKAIGVLKRQHLFWF* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1650 570 ProSitePatterns Trp-Asp (WD) repeats signature. 121 135 IPR019775 -
Psa1g1650 570 Gene3D Transferase(Phosphotransferase) domain 1 400 534 - -
Psa1g1650 570 CDD PKc_DYRK_like 346 534 - -
Psa1g1650 570 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 192 IPR001680 GO:0005515
Psa1g1650 570 Gene3D Phosphorylase Kinase; domain 1 340 427 - -
Psa1g1650 570 ProSiteProfiles Protein kinase domain profile. 346 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1650 570 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 21 83 IPR022052 -
Psa1g1650 570 SMART serkin_6 346 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1650 570 PANTHER DUAL SPECIFICITY PROTEIN KINASE 315 534 - -
Psa1g1650 570 SUPERFAMILY WD40 repeat-like 99 203 IPR036322 GO:0005515
Psa1g1650 570 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Psa1g1650 570 SUPERFAMILY Protein kinase-like (PK-like) 335 534 IPR011009 -
Psa1g1650 570 Gene3D - 3 205 IPR015943 GO:0005515
Psa1g1650 570 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 315 534 - -
Psa1g1650 570 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 143 IPR001680 GO:0005515
Psa1g1650 570 SMART WD40_4 94 134 IPR001680 GO:0005515
Psa1g1650 570 SMART WD40_4 143 183 IPR001680 GO:0005515
Psa1g1650 570 Pfam Protein kinase domain 346 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1650 570 Pfam 60Kd inner membrane protein 217 265 IPR001708 GO:0016021|GO:0032977
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1650 Psa-Chr1 114136232 114147855 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1650 202 264 Chloroplast and Mitochondria Gene Families AT2G28800 66.667 4.01e-23 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Psa1g1650 Pkinase 4.7e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1650 - - sind:105168544 423.705