Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1645 ATGATGGATGGTGCAATGGAGAAAAATTCAAGTGATGAAGTTTTTGAATTGCCACCTGGATTTAGGTTTCATCCAACAGATGAAGAACTCATAACTCATTATCTCTCTCAAAAAGTTCTTGATAATTGCTTTTGTGCTTTAGCTATTGGTGAAGTTGATTTGAACAAGTGTGAGCCTTGGGATTTACCTTGGAGGGCTAAAATGGGTGAGAAAGAATGGTATTTTTTCTGTGTGAGGGACAGGAAATATCCTACTGGTTTAAGAACAAATAGGGCCACATGTGCTGGATATTGGAAGGCAACAGGTAAAGACAAAGAAATTTATAGAGAGAAGACATTAATTGGAATGAAGAAAACTCTTGTTTTCTACAAAGGAAGAGCACCTAAAGGAGAAAAAACAAATTGGGTCATTCATGAATATAGATTAGAGGACCCATATTCTTTGCAAAATACTTCCAAAAGGGCTATGAGGGAATGGTCTATATGCAGAGTTTTTGAGAAAAGTTCAAGTGAAAACAAAACGGATATTCAAGATTTGGTAAGGTTCAATTCAAAAGGAAAAGAACAACTACCTCCATTGATGGATTCACCACCATACAACAATAATGAAACAAAAACAACTTTTGGAGATTCATCACATGTGACATGTTTCAATGACAACAACAACATTGTTGATGATAGATTTGAAAATCCTATGTTAACATCTTCATATTCTTCAAACCCTTCTTATGATACTATCTCATGGACCCAATATTTGTCACACCAATCAACACAAATTGGAAATTCATCACAATCCTCAGAAGAATCCATGTTGAAGATGTTGATTGAAAATAATGAGACAAAAAATCAGAAAGATCAAGAATGTAACTATGATGTTGACATTGACATTTCAACTATGATTTATAATGATGAAATGTTTCAAAGTTCTTATGTGAGTGAAGAATATTCATCAGCTTCAATAGGACATTTTGATAATGGTTGCTTATGGAATTTCTGA 996 0.3373 MMDGAMEKNSSDEVFELPPGFRFHPTDEELITHYLSQKVLDNCFCALAIGEVDLNKCEPWDLPWRAKMGEKEWYFFCVRDRKYPTGLRTNRATCAGYWKATGKDKEIYREKTLIGMKKTLVFYKGRAPKGEKTNWVIHEYRLEDPYSLQNTSKRAMREWSICRVFEKSSSENKTDIQDLVRFNSKGKEQLPPLMDSPPYNNNETKTTFGDSSHVTCFNDNNNIVDDRFENPMLTSSYSSNPSYDTISWTQYLSHQSTQIGNSSQSSEESMLKMLIENNETKNQKDQECNYDVDIDISTMIYNDEMFQSSYVSEEYSSASIGHFDNGCLWNF* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1645 331 Gene3D NAC domain 26 172 IPR036093 GO:0003677|GO:0006355
Psa1g1645 331 Pfam No apical meristem (NAM) protein 18 142 IPR003441 GO:0003677|GO:0006355
Psa1g1645 331 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 291 - -
Psa1g1645 331 SUPERFAMILY NAC domain 12 167 IPR036093 GO:0003677|GO:0006355
Psa1g1645 331 ProSiteProfiles NAC domain profile. 17 167 IPR003441 GO:0003677|GO:0006355
Psa1g1645 331 PANTHER NAC DOMAIN-CONTAINING PROTEIN 92-LIKE 9 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1645 Psa-Chr1 113325824 113328159 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1645 15 331 NAC Transcription Factor Family AT5G07680 51.543 1.38e-106 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa1g1645 NAM 3.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1645 - - gmx:100785620 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1645 1 113325824 113328159 Psa1g1645 1 113325824 113328159 ECH