Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1638 ATGGAAGGATTAAGAAAAGGAGCTTGGAGTAAAGTGGAAGATGAACTTCTCACAGATTGTGTGCGACAATATGGGGAAGGGACATGGCACCTTGTGCCCATAAGAGCAGGCTTGAAGAGATGCCGGAAAAGCTGTAGATTGAGGTGGTTGAGTTATTTAAAACCAACTATCAAACGTGGAGAATTCTCAGATGATGAAGTTGAGATGATGAAAAGATTGCATAGACTTTTGGGAAACAGATGGACCCTAATTGCTGGAAGACTTTCTGGAAGAACTCCTAATGATGTGAAAAATTACTGGAACACTCATATTCATAAAAAGGAAAAATTTACAAATGCAAAGACAAAAGAAATAATGAAAACTCATTTAGTGATAAAACCACAACCATGGATTTTCACAAGTATTAATTCAGCAATGTTGAAAATGAGGTTTTCTAGTGAAGATCAAAGTGGGCCCATCAAACAGTATCATACTCAAGCTGCATGTGATAATAGTATAGATGATAAGTGGTGGGAAGCTATGATAGATGATGACAAGGGAAACAATCCAAAAGATAATGATGGATATGAGATGCTAGACTTTAATGTGGATGAGTTTATGGCAAATGGTATTATTGAAGATCAAAGTTGGAATGATTTTCTTATTGATATTAATTCTTTGGATTTTTAA 669 0.3543 MEGLRKGAWSKVEDELLTDCVRQYGEGTWHLVPIRAGLKRCRKSCRLRWLSYLKPTIKRGEFSDDEVEMMKRLHRLLGNRWTLIAGRLSGRTPNDVKNYWNTHIHKKEKFTNAKTKEIMKTHLVIKPQPWIFTSINSAMLKMRFSSEDQSGPIKQYHTQAACDNSIDDKWWEAMIDDDKGNNPKDNDGYEMLDFNVDEFMANGIIEDQSWNDFLIDINSLDF* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1638 222 CDD SANT 61 104 IPR001005 -
Psa1g1638 222 Pfam Myb-like DNA-binding domain 6 53 IPR001005 -
Psa1g1638 222 Pfam Myb-like DNA-binding domain 59 103 IPR001005 -
Psa1g1638 222 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Psa1g1638 222 CDD SANT 8 53 IPR001005 -
Psa1g1638 222 Gene3D - 3 59 - -
Psa1g1638 222 Gene3D - 61 124 - -
Psa1g1638 222 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 3 136 - -
Psa1g1638 222 SUPERFAMILY Homeodomain-like 3 100 IPR009057 -
Psa1g1638 222 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 108 IPR017930 -
Psa1g1638 222 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 3 136 - -
Psa1g1638 222 SMART sant 58 106 IPR001005 -
Psa1g1638 222 SMART sant 5 55 IPR001005 -
Psa1g1638 222 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Psa1g1638 222 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1638 Psa-Chr1 112838780 112840312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1638 2 178 MYB Transcription Factor Family AT1G66370 46.377 1.42e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa1g1638 Myb_DNA-binding 7.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1638 - K16166 cam:101494325 284.263