Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1630 ATGGAGTCACAGATTAAGCATGCTGTTGTTGTGAAAGTTATGGGACGTACCGGATCAAGAGGACAGGTTACTCAGACGAAGTTGTCTGATAGAGTTTATAATGTGGAAAAATCAATGCAATTGCGGTCCAATGCTGTTGCAGAGATATCGATGGAGTCACAGATTAAGCATGCTGTTGTTGTGAAAGTTATGGGACGTACCGGATCAAGAGGGCAGGTTACTCAGGTTAGAGTGAAGTTTTTGGATGATCAGAATCGGCACATCATGAGGAATGTGAAAGGACCAGTTAGGGAGGGAGACATCCTCACTCTTCTTGAATCCGAGAGAGAAGCAAGAAGACTCAGATAG 348 0.4397 MESQIKHAVVVKVMGRTGSRGQVTQTKLSDRVYNVEKSMQLRSNAVAEISMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREARRLR* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1630 115 CDD S1_S28E 56 115 IPR000289 GO:0003735|GO:0005840|GO:0006412
Psa1g1630 115 Pfam Ribosomal protein S28e 54 114 IPR000289 GO:0003735|GO:0005840|GO:0006412
Psa1g1630 115 Pfam Ribosomal protein S28e 4 28 IPR000289 GO:0003735|GO:0005840|GO:0006412
Psa1g1630 115 PANTHER 40S RIBOSOMAL PROTEIN S28 1 28 IPR000289 GO:0003735|GO:0005840|GO:0006412
Psa1g1630 115 PANTHER 40S RIBOSOMAL PROTEIN S28 51 115 IPR000289 GO:0003735|GO:0005840|GO:0006412
Psa1g1630 115 Coils Coil 113 115 - -
Psa1g1630 115 ProSitePatterns Ribosomal protein S28e signature. 106 114 IPR028626 -
Psa1g1630 115 SUPERFAMILY Nucleic acid-binding proteins 51 115 IPR012340 -
Psa1g1630 115 Gene3D - 47 115 IPR012340 -
Psa1g1630 115 Gene3D - 1 46 IPR012340 -
Psa1g1630 115 Hamap 30S ribosomal protein S28e [rps28e]. 51 115 IPR000289 GO:0003735|GO:0005840|GO:0006412
Psa1g1630 115 PANTHER 40S RIBOSOMAL PROTEIN S28-1 51 115 - -
Psa1g1630 115 PANTHER 40S RIBOSOMAL PROTEIN S28-1 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1630 Psa-Chr1 111852868 111855767 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1630 51 115 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 90.769 4.15e-36 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1630 K02979 - egr:104443388 103.99