Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1617 ATGGCACCTTTTATGTTGACAGTGTCACAAGATGGAACTGGAAACTACAGAACTGTACAAGAAGCCATTGATGCAGTACCACTCGGCAACACTCGCCGGACGGTGATAAGGATATCGCCGGGAACCTACCGGCAGCCACTATATGTTCCAAAAACCAAGAACTTGATCACTTTTGCTGGCTTGTTTCCTGGAGATACTGTTCTGACATGGAACAACACTGCCAATAAAATTGATCACCATCAAGGTTGTAAGGTGATAGGGAATGGGACTTTTGGTTGTGGAAGTACTATTGTGGAAGGGGAAGATTTTATTGCTGAGAATATTACGTTTGAGAATTCTTCTCCTCAGGGTTCAGGACAAGCAGTGGCAGTTAGAGTAACAGCAGATCGATGTGCATTCTACAATTGCAGGTTCCTTGGATGGCAGGACACACTGTATTTACATTATGGCAAACTATATATGAAAGATTGTTATATTGAAGGAAGTGTGGACTTCATTTTTGGTAATAGCACTGCACTCTTGGAGCATTGTCATATCCATTGCAAGTCTGCGGGGTTCATAACTGCACAAAGCAGAAAATCTCCACATGAAAAAACTGGTTTTGTATTTTTGAGATGTGTTATCACGGGCAATGGAGGAAGTTCATATGCATATCTTGGAAGGCCATGGGGACCTTATGGAAGAGTGGTATTTGCGTATACTTATATGGATCAATGTATCAAACATGATGGTTGGAATAATTGGGGGAATGTTGAAAATGAAAGAAGTGCTTGCTTCTATGAATACAGGTGTTTTGGACTGGGTTTTGTTCCTTCGAAAAGGGTGAAATGGGCTAGAGTGTTAAAGGATAAAGAAGTTGAAGAGTTTCTGATGCATAGCTTCATTGATCCAGAACCTCAAAAACCATGGCTAGCTCAAAGAATGGCTTTAAGGATTCCATATTCTGCTTAG 951 0.4111 MAPFMLTVSQDGTGNYRTVQEAIDAVPLGNTRRTVIRISPGTYRQPLYVPKTKNLITFAGLFPGDTVLTWNNTANKIDHHQGCKVIGNGTFGCGSTIVEGEDFIAENITFENSSPQGSGQAVAVRVTADRCAFYNCRFLGWQDTLYLHYGKLYMKDCYIEGSVDFIFGNSTALLEHCHIHCKSAGFITAQSRKSPHEKTGFVFLRCVITGNGGSSYAYLGRPWGPYGRVVFAYTYMDQCIKHDGWNNWGNVENERSACFYEYRCFGLGFVPSKRVKWARVLKDKEVEEFLMHSFIDPEPQKPWLAQRMALRIPYSA* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1617 316 Pfam Pectinesterase 7 296 IPR000070 GO:0030599|GO:0042545
Psa1g1617 316 PANTHER PECTINESTERASE 1 315 - -
Psa1g1617 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 315 - -
Psa1g1617 316 SUPERFAMILY Pectin lyase-like 3 300 IPR011050 -
Psa1g1617 316 Gene3D - 4 310 IPR012334 -
Psa1g1617 316 ProSitePatterns Pectinesterase signature 2. 159 168 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1617 Psa-Chr1 111253315 111255617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1617 5 309 Carbohydrate Esterase AT5G47500 38.854 6.56e-70 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1617 K01051 - rcu:8283426 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1617 1 111253315 111255617 Psa1g1617 1 111253315 111255617 ECH