Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1595 ATGGGTTGCATTAGTTCCAAACATGTCGTCGCCGGAGCTTGTTCTCCCGCGCCAACCGTCGGAAGAGATGTCGCGGTTGTTCCTTCATCCAAGGTTCATTCTAGTTTGTTACCTTTGGATTCAAAATCATCATTAGAGGAAAATAAGAATAGCAAGTTTAATAAAAATGCCTCCAAGAAAAGTAGTGGCTCATTCAGCTTTAGAATTGGGTTTGTACAAAGACACGTTGAAGCTGAACAAAATGCTGCTGGTTGGCCTCCTTGGCTTACGGCTTCTGCCGCCGAAGCTGTTCAAGGTTGGATCCCTCTCAAAGCTGATTCTTTTCAAAAGTTGGATAAGATTGGACAAGGTACATATAGCAGTGTCTTTCGAGCACGTGAAGTTGAAACAGGAAGAATGTTTGCTCTAAAGAAAGTGAGGTTTGATAATTACCAAGCTGAGAGCATAAGATTCATGGCAAGAGAAATCACGCTTCTAAGGAGGCTTGACCATCCAAACATAATGAAATTGGAAGGAATAATCACTTCTAGAATGTCAAATAGCATATACCTTGTGTTCGAATACATGGAACACGATCTCGCTGGCCTAGTTTCTCGTCCCGATATTGTTTTCACAGACTCACAGATAAAATGCTACATGAGACAATTGTTAAGTGGACTCGAACATTGTCATGTTCGAGGTATCATGCATAGAGACATCAAAGTGTCGAACATCTTGTTGAACAATGAAGGTATTCTTAAGATAGGCGATTTTGGATTGGCAAACACAATTAGTCCCAACAATAAGCATCAATTAACGAGCCGCGTAGTAACGTTATGGTATCGTCCTCCCGAGCTCTTGATGGGAGCAACTAACTACGGAGTTTCGGTTGATTTGTGGAGTGTTGGATGTGTTTTTGCAGAACTTTTTCTTGGCAAACCTATTCTTAAAGGGAGAACCGAGGTTGAACAATTACACAAAGTTTTTAAGCTGTGTGGTTCTCCACCTGAAGAGTTTTGGAAAAAGACCAAACTTCCTCATGCAACAATGTTCAAACCTCAGACTAACTACGAAAGCTCGCTTCGAGAAAAGTGCGCAGATTTCCCTGAATCGGCTGTAGGTTTACTCGAAACCTTACTATCCATCGATCCTAGCAACCGCGGAACCGCCTCCTCCGCTCTAATATCGGAGTATTTCAACACTAAGCCATATCCTTGTAATCCATCAAACTTGCCAAAGTATACACCTAGCAAAGAAATGGATGCTAAAAGTTATGAAGAAACAGCATCCAGGAAAAAGACCGGCGATAAAATGCGAGAGGCTGCAACGTCTAAAAGGCAACAAAAACGAAACCATAAGGAACAAAACAATTATGGCAAATCAACTTCAAAAGAGAATATTTCTCAAAATACTAGAAAAGATGATGGTAAAGCAAGTTTTTCAAAGGGAAAAGGAGGATCTATGCTAAAAGATCACAGTAAAACTTCAATGGATGCAATGTTAGAGACTTCTCAAAAGTTCAATGTTGCTGATGGCAATGGCTATACTGTACCGGTCCAAGGAGGATCTAATGAATATTCATGGACAAAAAGAAGAAAACAAGAAGCATCATCTATATTATCAGATGGATCAAGAAGTAAAATTAGTGCATTGGATCCTAACTTTGCAAAAGAAACATATGATTTAACTAAACAAAGGGTTTCCATGGACTTTAATCCTAAGGAACTAATGAATGCACAGGGAAAAAAAGAAGATCAAGGTGCATATTGGAATGATGGTGTGCGACGTGCGGCTCGTAAATCAAGGTTTGGAAGAGATATATGA 1803 0.4004 MGCISSKHVVAGACSPAPTVGRDVAVVPSSKVHSSLLPLDSKSSLEENKNSKFNKNASKKSSGSFSFRIGFVQRHVEAEQNAAGWPPWLTASAAEAVQGWIPLKADSFQKLDKIGQGTYSSVFRAREVETGRMFALKKVRFDNYQAESIRFMAREITLLRRLDHPNIMKLEGIITSRMSNSIYLVFEYMEHDLAGLVSRPDIVFTDSQIKCYMRQLLSGLEHCHVRGIMHRDIKVSNILLNNEGILKIGDFGLANTISPNNKHQLTSRVVTLWYRPPELLMGATNYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKVFKLCGSPPEEFWKKTKLPHATMFKPQTNYESSLREKCADFPESAVGLLETLLSIDPSNRGTASSALISEYFNTKPYPCNPSNLPKYTPSKEMDAKSYEETASRKKTGDKMREAATSKRQQKRNHKEQNNYGKSTSKENISQNTRKDDGKASFSKGKGGSMLKDHSKTSMDAMLETSQKFNVADGNGYTVPVQGGSNEYSWTKRRKQEASSILSDGSRSKISALDPNFAKETYDLTKQRVSMDFNPKELMNAQGKKEDQGAYWNDGVRRAARKSRFGRDI* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1595 600 MobiDBLite consensus disorder prediction 406 486 - -
Psa1g1595 600 MobiDBLite consensus disorder prediction 412 452 - -
Psa1g1595 600 CDD STKc_CDK9_like 108 392 - -
Psa1g1595 600 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Psa1g1595 600 PANTHER CYCLIN-DEPENDENT KINASE 1 594 - -
Psa1g1595 600 Gene3D Transferase(Phosphotransferase) domain 1 191 463 - -
Psa1g1595 600 Pfam Protein kinase domain 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1595 600 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Psa1g1595 600 SMART serkin_6 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1595 600 PANTHER CELL DIVISION PROTEIN KINASE 1 594 - -
Psa1g1595 600 SUPERFAMILY Protein kinase-like (PK-like) 103 399 IPR011009 -
Psa1g1595 600 ProSiteProfiles Protein kinase domain profile. 108 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1595 600 Gene3D Phosphorylase Kinase; domain 1 95 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1595 Psa-Chr1 110327329 110330073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1595 100 426 Core Cell Cycle Gene Families AT5G10270 47.851 1.46e-110 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Psa1g1595 Pkinase 1.8e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1595 - - gmx:100790917 888.256