Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1592 ATGGATGGATCAGCTGGCCCTGGTGGTGGAAATGTGAACGCATTTCTACGGAATTATAAAATGGGAAAAACACTTGGCATTGGGTCCTTTGGCAAAGTGAAGATTGCAGAGCATGTATTGACCGGTCATAAAGTCGCCATAAAGATTCTTAACCGTCGCAAGATAAAGAACATGGAAATGGAAGAGAAAGTATTTGAGCTAACTTCTGCTTTGGTAGCAGATAATCTCTGGTGTGGAGTTATCTCTGGAAAATTATATGCTGGACCTGAAGTAGATGTTTGGAGCTGCGGTGTAATTTTATACGCACTTCTCTGTGGCACTCTACCTTTTGATGATGAAAATATTCCCAACCTCTTCAAAAAAATAAAGGGTGGGATATATACTCTTCCCAGTCATCTATCTCCTGGTGCCAGAGATTTGATACCAAGGCTGCTTGTGGTGGATCCCATGAAAAGGATTACCATACCAGAGATACGCCAACACCAATGGTTCCAACTTCGTCTGCCGCGTTATTTGGCGGTGCCACCACCGGATACACTTCAACAAGCCAAAAAGATTGATGAGGAGATTCTTCAGGAGGTGGTTAATAGGGGATTTGACAGGGATCAATTGGTTGAGTCCCTTAGCAACAGGGTGCAAAATGAGGGTACTGTAACTTACTATTTGTTATTGGACAATCGTTATCGTGTTTCCACTGGCTATCTTGGAGCTGAGTTTCAAGAGACAATGGATCCTGGTTTGAACCGTATCAACTCCGGTGAAGTTGTTTCTCCAGCTGGTGGGCACCACTTTTTAGGGTATCAGGGAGTAGGAATGAGGCAACAGTTCCCTGCTGAGAGAAAATGGGCCCTTGGGCTTCAGGTGCAATGTTTTACTTGTTAG 882 0.4399 MDGSAGPGGGNVNAFLRNYKMGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMEMEEKVFELTSALVADNLWCGVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRLLVVDPMKRITIPEIRQHQWFQLRLPRYLAVPPPDTLQQAKKIDEEILQEVVNRGFDRDQLVESLSNRVQNEGTVTYYLLLDNRYRVSTGYLGAEFQETMDPGLNRINSGEVVSPAGGHHFLGYQGVGMRQQFPAERKWALGLQVQCFTC* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1592 293 SUPERFAMILY Protein kinase-like (PK-like) 14 165 IPR011009 -
Psa1g1592 293 SMART serkin_6 19 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1592 293 Pfam UBA/TS-N domain 186 222 IPR015940 -
Psa1g1592 293 CDD UBA_SnRK1_plant 186 226 - -
Psa1g1592 293 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 185 225 IPR015940 -
Psa1g1592 293 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Psa1g1592 293 PANTHER SERINE/THREONINE KINASE 79 217 - -
Psa1g1592 293 PANTHER SERINE/THREONINE KINASE 9 64 - -
Psa1g1592 293 Pfam Protein kinase domain 80 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1592 293 Gene3D Phosphorylase Kinase; domain 1 11 73 - -
Psa1g1592 293 ProSiteProfiles Protein kinase domain profile. 1 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1592 293 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 79 217 - -
Psa1g1592 293 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 9 64 - -
Psa1g1592 293 Gene3D Transferase(Phosphotransferase) domain 1 78 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1592 Psa-Chr1 110198968 110205150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1592 80 193 CBL-interacting serine-threonine protein kinases AT5G10930 44.737 4.64e-23 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Psa1g1592 Pkinase 4.9e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1592 K07198 - gmx:547544 387.111