Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1590 ATGGGAAGGAAGAGAAAGGTTTCTGAAGTAGTTGAAGAAGGAAGCATGGTTTGGGATGAAATGATGAAAGAAGCTGCATCCCTAGGAGGAGCTAGACGAGTCCGAAAACGATTCGTCGGTGTTCGACAAAGGCCGTCGGGAAGATGGGTTGCGGAGATAAAAGACACCATTCAAAAGATAAGAGTTTGGTTAGGAACTTTTGATACAGCTGAAGAAGCTGCAAGAGCTTATGATGAGGCTGCTTGTTTGCTTCGCGGCGCCAATACTCGCACGAATTTCTGGCCTTGTTCTCAATCTTCAACTAGTCCTGCCCTCTCTTCAAAGATCACTAATATTTTACTTCAAAGACTTAAAGAAAGGAACATGATCAACAATAACTCTTGTTCTTCGCCGAATTACACTTCCTTGTTGGGGAGTTCCGAGGAGCGTCAGGGTCAGGAGCAACAACGAGGCAATGATCACGAGATGCAACGAGTGGAGGAAACCTACGGAGAAGTATCGAAAGATTTCTCAATTGATCAATTCACCGATTTTCTCAACGATCACGAAGATTATAGCGCAAGCAACAACGATTTCATCAACGACGCTGCTCAATTCGACTACATTTCAAGTAGTTTCGAATCATGTTTAACCGAAAGCAACGTCTGCAAAGGAAACGAGAACATCAATATCGAATACAAATCAACATCAAACAATGTGACACAAACTTCAAGTGGTGATAGCAATTCAGAAGATAGTGAAGAAGAAGTCAATGACTTAGGTATCGTCGACGCTCCCGATTTTCGGTTCCTCGACGATATTGCTCCAACTAGTTACTACTCGCCTTTCGAGATTGCTGAAGAAATGGAAGAAAAAATAGAAACAGAAGATTTTCATGATGAGCCTTCAATGATAAGAGCCGTTATGAAGAGAATGAAGTATGAGAGAAAATTTTCAGCTTCTCTTTATGCATTCAATGGAATACCGGAATGTTTGAAGTTGAAACTTGAATCAGGAAACAACAATGGAAGAGGATTGATTTCTGAACAATTGAACAATCTTAAGGAATCATGTAGCAAGAACAATAAGGTTGAGAAGAAGAATGAAGAAAATGAACAAGTTTCAATGGAGATTGAAGCTTGTTCATTGTCTAGGAATGATAGTGATGTTTTCCTTTGGAATTCACTTGATCTTCCTCCAATTTGTTTTGTTAACTTACTTGAAAATGGTTCATTTAATTAG 1221 0.3972 MGRKRKVSEVVEEGSMVWDEMMKEAASLGGARRVRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSTSPALSSKITNILLQRLKERNMINNNSCSSPNYTSLLGSSEERQGQEQQRGNDHEMQRVEETYGEVSKDFSIDQFTDFLNDHEDYSASNNDFINDAAQFDYISSSFESCLTESNVCKGNENINIEYKSTSNNVTQTSSGDSNSEDSEEEVNDLGIVDAPDFRFLDDIAPTSYYSPFEIAEEMEEKIETEDFHDEPSMIRAVMKRMKYERKFSASLYAFNGIPECLKLKLESGNNNGRGLISEQLNNLKESCSKNNKVEKKNEENEQVSMEIEACSLSRNDSDVFLWNSLDLPPICFVNLLENGSFN* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1590 406 CDD AP2 36 93 IPR001471 GO:0003700|GO:0006355
Psa1g1590 406 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Psa1g1590 406 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Psa1g1590 406 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Psa1g1590 406 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Psa1g1590 406 MobiDBLite consensus disorder prediction 227 250 - -
Psa1g1590 406 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 8 350 - -
Psa1g1590 406 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Psa1g1590 406 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 8 350 - -
Psa1g1590 406 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Psa1g1590 406 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Psa1g1590 406 MobiDBLite consensus disorder prediction 227 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1590 Psa-Chr1 110116607 110118337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1590 35 113 AP2-EREBP Transcription Factor Family AT5G19790 72.152 2.94e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa1g1590 AP2 7.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1590 K09286 - gmx:100790398 490.345