Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1578 ATGATCGTCTGGTTGGTTGGCTTGGTTGGTGGATTTAAGATGCCTCTACCATCAACATGCCCAATGGAATTTTCTGCCATGCCTGAACATTTTGTAGAAGATGCCATGGAACTTCTAATATTTGCTTCCCGGATTCCAAGGGCCTTAGATGGAGTAGTGCTGGATGAGTTTATGAACTTCATAATTATGTTCATGGGCAGCCCTGATTTTATCAAAAACCCATATCTGAGAGCCAAGATGGTTGAAGTTCTGAACAGCTGGATGCCTCGTAGGAGTGGCTCATCTGCTACAGCTACTCTATTTGAAGGGCACCAACTGTCTCTTGAGTATCTTGTGAGGAATCTTCTGAAACTTTATGTTGACATTGAGTTTACCGGTTCTCACACGCAGTTCTACGACAAGTTTAACATCCGCCATAATATTGCCGAACTTCTTGAATACTTGTGGAATGTCCCTAGTCACCGTAATGCTTGGAGACAGATTGCTAAAGAGGAGGAAAAGGGTGTCTATCTCAATTTCTTAAACTTTCTGATCAATGATAGTATTTATCTTCTTGACGAAAGTCTGAACAAAATTCTTGAGCTAAAAGAATTAGAGGCTGAAATGTCAAATACTGTCGAATGGGAGCGACGGCCAGTTCAAGAGAGGCAGGAAAGAACCCGGTTATTCCACTCTCAAGAAAATATTATTCGGATAGATATGAAGTTGGCAAATGAAGATGTCAGTATGCTTGCATTTACTTCAGAGCAGATTACTGCTCCTTTCCTGCTTCCTGAGATGGTTGATAGAGTGGCCAGTATGCTCAATTACTTTCTGCTGCAATTGGTTGGTCCCCAAAGAAAATCACTTAGTCTGAAAGATCCTGAAAAATATGAATTTCGTCCAAAGCATTTACTAAAACAGATTGTGCATGTATATGTTCATCTGGCTAGAGGTGACACAAATTCCATCTTCCCATCTGCTATCTCAAAGGATGGCCGATCATACAATGATCAGTTGTTCAGCTCTGCTGCAGACGTCCTTCATAGAATTGGCGAGGATGGAAGAATTATACAGGAATTTATTCAGCTTGGTGCTAAAGCCAAAATTGCTGCTTCAGAGGCAATGGATGCCGAAGCTACTCTTGGAGAAATACCAGATGAATTCCTGGATCCAATCCAATACACTTTGATGAAAGATCCGGTTATCTTGCCTTCTTCAAGGATCACAGTTGATCGTCCTGTCATCCAGAGACATCTTCTCAGTGATAGTAGTGACCCATTCAATCGTTCTCATCTTACCGCTGATATGCTGATTCCTGATGTTGAGCTCAAAGCAAGGATTGAAGAGTTTATCAGGTCCCAAGAAATGAAGAAACACGGTGGTGAAGGCCTAAGCTTACAAAGTACCAAGGCCACCATTCAAACCACAGATAGTGCGGAAATGTTGATTGATTAG 1437 0.4168 MIVWLVGLVGGFKMPLPSTCPMEFSAMPEHFVEDAMELLIFASRIPRALDGVVLDEFMNFIIMFMGSPDFIKNPYLRAKMVEVLNSWMPRRSGSSATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWNVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTVEWERRPVQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVDRVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHVYVHLARGDTNSIFPSAISKDGRSYNDQLFSSAADVLHRIGEDGRIIQEFIQLGAKAKIAASEAMDAEATLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSSDPFNRSHLTADMLIPDVELKARIEEFIRSQEMKKHGGEGLSLQSTKATIQTTDSAEMLID* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1578 478 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 377 455 IPR013083 -
Psa1g1578 478 PANTHER - 1 452 - -
Psa1g1578 478 CDD RING-Ubox_UBE4A 380 448 - -
Psa1g1578 478 Pfam Ubiquitin elongating factor core 4 361 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Psa1g1578 478 Pfam U-box domain 378 449 IPR003613 GO:0004842|GO:0016567
Psa1g1578 478 SUPERFAMILY RING/U-box 370 450 - -
Psa1g1578 478 ProSiteProfiles U-box domain profile. 377 451 IPR003613 GO:0004842|GO:0016567
Psa1g1578 478 PANTHER UBIQUITINATION FACTOR E4 1 452 IPR045132 GO:0000151|GO:0030433|GO:0034450
Psa1g1578 478 SMART Ubox_2 381 444 IPR003613 GO:0004842|GO:0016567
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1578 1 478 U-box Gene Family AT5G15400 82.917 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1578 K10597 - gmx:100806175 893.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1578 1 109129355 109132744 Psa1g1578 1 109129355 109132744 ECH