Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1577 AAAATCGATTTTCGATCACTCCAATGGCGACTCGAAACCCCAACGAACTCCACAAGAAGTGGAAGACATCATCATCCGCAAAATCTTCCACGTCACCATCACCGAGAATCCAACTCCGCCCACCGCAACTACCGATTCGAGATCGTTTATCTTCGAACTAACCGCCGCCGAGATTCTCAGCGAAGGCAAAGACCTTCTCCTCTCTCGCGAGGTTATGGAGAGAGTCCTAATCGATCGTCTATCCGGAGATTCTCTAGATTCCGTGCTGAAAAGCTCCACGTTTCAGTATCTGGTTGTTGTTACAATCGCGCACATGATGAAGCGAAGAAAATCGTTAACATGAAGGATAAAGATGTTAGGTCAGAGATGGAGAATGTTGTGAAGCAAGCTAAGAAGCTGTGTTTTCTTATTTGTGGTGGAGGCGGTGGAATGGGGTTTTTGGTGGTGGAATGGTGGGGGAGAGTGAGGAGTCCTCCAGGCAACAGTGCTTTTCTGATGCGTCAACTCGGCGACCATCTGACTTATTATCTTCATATACCACCATCAAAAACTGTCATGAATACCCTATACGATGGCCTATCTGAAGTACTCCGCAACCTCCTTAGAAGTAAAGATACTCGTGAAAATGTACTTGAGTATCTTGCAGAAGTGATCAATTTAAATGCATCTAGGGCTCATATACAGGTTGACCCAATTACGTGTGCAAGTTCAGGCATGTTTGTAAATCTGAGTGCTGTCATGCTTCGCCTCTGTGAGCCATTTTTAGATGCAAATTTAACAAAAAGGGTAAAATTGATGCTAAATAATGTTCACCACTCAAACCGGTTGAAGCTAAGTGGGTTGACTGCCCTTCATGCGTCATCAGAAGAAGTTGCTGAATGGCTTACTAGTAAAAACCCAGCTAAGGCAGGGGAAAATAATCAATATAATGATGGTGAGAAACGTCTGCAACAATCTCAAGAGGCCAGTAGTTCTGAGTGCTCAACTTGGGCTTTTAAAAGCATTTTTCCGACTTCAAACACTTAG 1026 0.4405 KIDFRSLQWRLETPTNSTRSGRHHHPQNLPRHHHRESNSAHRNYRFEIVYLRTNRRRDSQRRQRPSPLSRGYGESPNRSSIRRFSRFRAEKLHVSVSGCCYNRAHDEAKKIVNMKDKDVRSEMENVVKQAKKLCFLICGGGGGMGFLVVEWWGRVRSPPGNSAFLMRQLGDHLTYYLHIPPSKTVMNTLYDGLSEVLRNLLRSKDTRENVLEYLAEVINLNASRAHIQVDPITCASSGMFVNLSAVMLRLCEPFLDANLTKRVKLMLNNVHHSNRLKLSGLTALHASSEEVAEWLTSKNPAKAGENNQYNDGEKRLQQSQEASSSECSTWAFKSIFPTSNT* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1577 341 MobiDBLite consensus disorder prediction 55 79 - -
Psa1g1577 341 MobiDBLite consensus disorder prediction 24 39 - -
Psa1g1577 341 MobiDBLite consensus disorder prediction 11 40 - -
Psa1g1577 341 Pfam Ubiquitin elongating factor core 184 301 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Psa1g1577 341 PANTHER - 99 138 - -
Psa1g1577 341 PANTHER - 183 331 - -
Psa1g1577 341 MobiDBLite consensus disorder prediction 302 326 - -
Psa1g1577 341 PANTHER UBIQUITINATION FACTOR E4 183 331 IPR045132 GO:0000151|GO:0030433|GO:0034450
Psa1g1577 341 PANTHER UBIQUITINATION FACTOR E4 99 138 IPR045132 GO:0000151|GO:0030433|GO:0034450
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1577 Psa-Chr1 109124805 109128063 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1577 183 325 U-box Gene Family AT5G15400 65.035 4.26e-50 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1577 K10597 - gmx:100806175 230.72