Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1576 ATGGCGACTCCGAAACCCCAACGAACTCCACAAGAAGTGGAAGACATCATCATCCGCAAAATCTTCCACGTCACCATCACCGGAGAATCCAACTCCGCCACCGCAACTACCGATTCGAGAATCGTTTATCTTGAACTAACCGCCGCCGAGATTCTCAGCGAAGGCAAAGACCTTCTCCTCTCTCGCGAGGTTATGGAGAGAGTCCTAATCGATCGTCTATCCGGAGATTTCTCTGATTCCGGTGCTGAAGCTTCCACGTTTCAGTATCTGGTTGGTTGTTACAATCGCGCACATGATGAAGCGAAGAAAATCGTTAACATGAAGGATAAGAATGTTAGGTCAGAGATGGAGAATGTTGTGAAGCAAGCTAAGAAGCTGTGTGTTTCTTATTGTAGGATCCATCTGGCGAATCCTGAGCTTTTTGCGAGTAAGAATTCGAATTCTGATACTAGAACATCTCCTTTATTGCCGTTGATTATATCGGAGTGTGGTGGAGGCGGTGGAATGGGGGTTTTTGGTGGTGGAAGTGGTGGGGGAGGAGTGAGGAGTCCTCCAGGGTTTTTGGATGAGTTTTTTAGGGATCCTGATTTCGAAAGTTTGGATAGAATTTTGAAAGGGTTGTATGAAGAATTGCGAGGGAGTGTGATGAAAGTTTCTGTTCTTGGAAATTTTCAGGACTCTCTTAGGGCTTTGTTGTTTTTGGTTAGATTACCTGTTGGTGCAAAGTCTCTTGTTAGTCATGAGTGGTGGATTCCCAAAGGTGTTTATATGAATGGTCGGGCTATTGAAATGACTAGCATTTTGGGTCCCTTTTTTCATATCAGTGCTATTCCTGATCAAACCTTCTTCAAGAGCCAGCCTGATATTGGGCAACAGTGCTTTTCTGATGCGTCAACTCGGCGACCATCTGACTTATTATCTTCATATACCACCATCAAAACTGTCATGAATACCCTATACGATGGCCTATCTGAAGTACTCCGCAACCTCCTTAGAAGTACAGATACTCGTGAAAATGTACTTGAGTATCTTGCAGAAGTGATCAATTTAAATGCATCTAGGGCTCATATACAGGTTGACCCAATTACGTGTGCAAGTTCAGGCATGTTTGTAAATCTGAGTGCTGTCATGCTTCGCCTCTGTGAGCCATTTTTAGATGCAAATTTAACAAAAAGGGATAAAATTGATGCTAAATATGTTCACCACTCAAACCGGTTGAAGCTAAGTGGGTTGACTGCCCTTCATGCGTCATCAGAAGAAGTTGCTGAATGGCTTACTAGTAAAAACCCAGCTAAGGCAGGGGAAAATAATCAATATAATGATGGTGAGAAACGTCTGCAACAATCTCAAGAGGCCAGTAGTTTGGTAGCATAA 1374 0.4338 MATPKPQRTPQEVEDIIIRKIFHVTITGESNSATATTDSRIVYLELTAAEILSEGKDLLLSREVMERVLIDRLSGDFSDSGAEASTFQYLVGCYNRAHDEAKKIVNMKDKNVRSEMENVVKQAKKLCVSYCRIHLANPELFASKNSNSDTRTSPLLPLIISECGGGGGMGVFGGGSGGGGVRSPPGFLDEFFRDPDFESLDRILKGLYEELRGSVMKVSVLGNFQDSLRALLFLVRLPVGAKSLVSHEWWIPKGVYMNGRAIEMTSILGPFFHISAIPDQTFFKSQPDIGQQCFSDASTRRPSDLLSSYTTIKTVMNTLYDGLSEVLRNLLRSTDTRENVLEYLAEVINLNASRAHIQVDPITCASSGMFVNLSAVMLRLCEPFLDANLTKRDKIDAKYVHHSNRLKLSGLTALHASSEEVAEWLTSKNPAKAGENNQYNDGEKRLQQSQEASSLVA* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1576 457 Pfam Ubiquitin elongating factor core 268 431 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Psa1g1576 457 MobiDBLite consensus disorder prediction 425 457 - -
Psa1g1576 457 PANTHER - 1 451 - -
Psa1g1576 457 PANTHER UBIQUITINATION FACTOR E4 1 451 IPR045132 GO:0000151|GO:0030433|GO:0034450
Psa1g1576 457 MobiDBLite consensus disorder prediction 430 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1576 Psa-Chr1 109116519 109121555 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1576 1 454 U-box Gene Family AT5G15400 67.532 0.0 626
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1576 K10597 - gmx:100806175 707.212