Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1569 ATGGTATGCATGTTGTTCAATAACTCATTAGCACCTTGTACTATGAGATTAGCTTGTAGTTGTTGGAAACTAGACAATGTTTCAGGTCGTGAGGCTAGTGGTCGTACCGAAGGCCTCCGCGTTGTTTCTCTCAACATCACCGGTAACGGCGATGATGGTCACCGGAGTTCACATCCTTGCTCCGATTTTGGTATGTTTCCTCTTTACGGATTTGGAATTAGGAGAAGTTGTGTTGGTGTTAAGGGTTCTTTGTTAGGAAAGTTTCCATCTTTGATCAGTGAGTTAACTGAGCTTAGGGTTCTTTCTTTACCCTTCAATGGGTTGGAGGGTTCAATTCCTGAAGAGATTTGGATGTTTTGTCTTCTCTTGATAGAGGTTTTGAATTTAGCTGCAAATGGTTTGAATGGTTCTGTTCCTGGTTTTGTTGGGAAGCTAAAAGGGGTGTATTTGTCTTTTAATCAATTCAGTGGAGTTATTCCTGGAGAGATTGGTAAGAACTGTGGGAAGCTTGAGCATTTGGATTTGTCTGGTAACTCTTTGGTTCAAGAGATTCCAAAGAGTTTGGGGAATTGTGGTTTGTTGAAGACACTTTTGTTGTATTCAAATTTGTTGGAAGAGGAAATTCCTGCCGAATTTGGCAACCTTAAGAGCCTTGTGGTGTTGGATGTTTCGAGGAATACGCTTAGTGGTTCTATTCCTCGAGAGCTTGGGAATTGTAAGGAGCTAACGGTTGTTGTGCTATCCAACCTTTTCAATCCGATTGGGGATGTTGAGTTTGTTACTTTGAATGATGAGTTGAACTATTTTGAAGGTTCAATGCCTGAGGAAGTTGTGTCGCTCCCTAAGCTTACGATTTTGTGGGCTCCCATGGTGAATTTGGAGGGAAGTTTTCCTAGGAATTGGGGTGCTTGCGGTAACTTGGAGATGGTTAGTTTGGCTCAGAATTTCTTCACTGGAGAGTTCCCGAACCGGCTTGGTTTATGCAAGAAGCTGCATTTTCTTGATCTGAGCTTAAACAATCTTACAGGGGAGCTTTCGAAGGAACTTCATGTTCCATGTATGACTGTGTTTGACGTTAGTGGGAATATGTTGTCTGGTTCAGTTCCTGATTTCTCCAATAATGTCTGTTCTCCCTTTCCTTCCTGGAATGGGAATCTGTTCGAATCTGACAATGCTGCATCTCCTTATGCATCATATTTCATATCGAAAGCCCGGGAGAGAACTCTTTTCGCATCATTAGGGGGAGTTGGTCTTTCAGTTTTTCACAACTTAGGGCAAAACAACTTCAGTGGCATTCAGTCATTGCCAATAGCAGGAGACAGGATGGAGGAAAAGAGCGGTTACACCCTTCTTGTCGATCAGAACGAGTTCACAGGACCGTTTCCTACATATTTGTTAAAGAAATGTGAAGGATTAGATGGATTGCTTTTGAATCTGAGTTTTAATAGACTATCTGGTGAGATTCCTTCTAATATTAGTAGAATGTGTAAATCACTCAAAGTTTTGGATGCATCTGGAAATCGAATTTCAGGAGAAATTCCCTATACTGTAGGGGATTCGGTCTCTCTTGTTTCCTTGAACCTTAGTAAAAACCAGTTACAAGGTCAGATTCCCGCCAGCCTCGGGCAGATGAAGGATCTGAAGTTCCTCTCTTTAGCTGGTAATAACTTGAGTGGCTCAATTCCTTCCAATCTGGGGCAGTTGTACTCTTTACAAGTCTTGGACCTTTCTACAAACTCTCTTACTGGTGAGATTCCAAAGTTTATTGAGAACATGAGAAATCTGACAGATGTTTTGCTCAATAACAACAACCTTTCTGGACACATTCCTGCTGGTTTGGCAAATGTTACTACACTCTCTATATTAAATGTGTCTTTCAATAACTTATCTGGATACTTGCCATCAAATAGTAGCTTGATCAAATGCAGCAGTGCTGTTGGAAATCCATTTCTAAGTTCCTGTCGTGGAGTTTCTCTAACTGTGCCATCGGCAAATCAACAAGGCCAGTTTGAAGACAATTCTTCTATTACTGCACAATCCACTGGAAAAAGTAGTGACAATGGTTTCAGTGCTATTGAAATAGCATCTATTACTTCTGCTTCAGCCATTGTTTCTGTTCTTATAGCTCTCATTGTTCTGTTCTTCTTCACACGAAGGTGGAAGCCGAATTCCAGGGTTGGTGGTTCTGCCAAAAGAGAAGTTACAGTGTTTACTGATATCGGTGTCCCGTTGACATTTGAAAATGTTGTCCAAGCCACAGGAAATTTCAATGCAAGCAACTGTATTGGAAGTGGAGGATTTGGTGCAACTTATAAGGCAGAGATATCACAAGGAATCTTGGTGGCAGTGAAACGTCTTTCAGTTGGCGTTTCCAAGGTGTTCAACCAGTTTCATGCAGAGATTAAGACCCTTGGAAGGCTTCATCATCCAAATCGTGGTAATCTTGAGAAGTTCATCCAGGAGAGATCCACTAGGGCTGTAGATTGGAAAATTCTTCACAAGATTGCATTGGACATAGCGCGTGCACTTTCCTATCTGCATGATCAATGTGTACCGCGTGTTCTTCATCGCGATGTCAAACCTAGCAATATCTTGTTGGATGATGATTTCAATGCTTATCTATCCGACTTCGGACTGGCCAACTTCTTGGAACTTCAGAGACACATGCTACAACCGGAGTGGCAGGAACATTCGGATAAGGCTGATGTGTATAGCTATGGTGTGGTGCTTCTTGAGCTGCTATCAGATAAGAAAGCATTGGACCCTTCATTTTCTTCTTATGGTAATGGTTTCAATATAGTGGCATGGGGATGCATGCTACTGAGGGAAGGAAGGGCAAAGGAATTTTTCACTCCTGGATTATGGGATGCAGGCCCAGAAAATGATTTGGTAGAGGTTCTACACCTAGCTGTTGTTTGTACTGTTGATTCATTATCAACTAGACCTACAATGAAACAGGTTGTGAAAAGGTTAAAGCAACTTCAACCTCCACCATGCTAG 3000 0.4183 MVCMLFNNSLAPCTMRLACSCWKLDNVSGREASGRTEGLRVVSLNITGNGDDGHRSSHPCSDFGMFPLYGFGIRRSCVGVKGSLLGKFPSLISELTELRVLSLPFNGLEGSIPEEIWMFCLLLIEVLNLAANGLNGSVPGFVGKLKGVYLSFNQFSGVIPGEIGKNCGKLEHLDLSGNSLVQEIPKSLGNCGLLKTLLLYSNLLEEEIPAEFGNLKSLVVLDVSRNTLSGSIPRELGNCKELTVVVLSNLFNPIGDVEFVTLNDELNYFEGSMPEEVVSLPKLTILWAPMVNLEGSFPRNWGACGNLEMVSLAQNFFTGEFPNRLGLCKKLHFLDLSLNNLTGELSKELHVPCMTVFDVSGNMLSGSVPDFSNNVCSPFPSWNGNLFESDNAASPYASYFISKARERTLFASLGGVGLSVFHNLGQNNFSGIQSLPIAGDRMEEKSGYTLLVDQNEFTGPFPTYLLKKCEGLDGLLLNLSFNRLSGEIPSNISRMCKSLKVLDASGNRISGEIPYTVGDSVSLVSLNLSKNQLQGQIPASLGQMKDLKFLSLAGNNLSGSIPSNLGQLYSLQVLDLSTNSLTGEIPKFIENMRNLTDVLLNNNNLSGHIPAGLANVTTLSILNVSFNNLSGYLPSNSSLIKCSSAVGNPFLSSCRGVSLTVPSANQQGQFEDNSSITAQSTGKSSDNGFSAIEIASITSASAIVSVLIALIVLFFFTRRWKPNSRVGGSAKREVTVFTDIGVPLTFENVVQATGNFNASNCIGSGGFGATYKAEISQGILVAVKRLSVGVSKVFNQFHAEIKTLGRLHHPNRGNLEKFIQERSTRAVDWKILHKIALDIARALSYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLANFLELQRHMLQPEWQEHSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWGCMLLREGRAKEFFTPGLWDAGPENDLVEVLHLAVVCTVDSLSTRPTMKQVVKRLKQLQPPPC* 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1569 999 Gene3D Ribonuclease Inhibitor 81 253 IPR032675 -
Psa1g1569 999 Gene3D Ribonuclease Inhibitor 412 674 IPR032675 -
Psa1g1569 999 ProSitePatterns Protein kinases ATP-binding region signature. 762 784 IPR017441 GO:0005524
Psa1g1569 999 Pfam Leucine Rich Repeat 169 191 IPR001611 GO:0005515
Psa1g1569 999 SUPERFAMILY Protein kinase-like (PK-like) 737 992 IPR011009 -
Psa1g1569 999 Gene3D Ribonuclease Inhibitor 254 379 IPR032675 -
Psa1g1569 999 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 39 120 - -
Psa1g1569 999 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 124 997 - -
Psa1g1569 999 Gene3D Transferase(Phosphotransferase) domain 1 744 811 - -
Psa1g1569 999 ProSiteProfiles Protein kinase domain profile. 756 994 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1569 999 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 124 997 - -
Psa1g1569 999 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 39 120 - -
Psa1g1569 999 SMART LRR_typ_2 592 615 IPR003591 -
Psa1g1569 999 SMART LRR_typ_2 544 568 IPR003591 -
Psa1g1569 999 SMART LRR_typ_2 167 191 IPR003591 -
Psa1g1569 999 SMART LRR_typ_2 95 119 IPR003591 -
Psa1g1569 999 SMART LRR_typ_2 215 239 IPR003591 -
Psa1g1569 999 SUPERFAMILY L domain-like 86 654 - -
Psa1g1569 999 Gene3D Transferase(Phosphotransferase) domain 1 812 997 - -
Psa1g1569 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 854 866 IPR008271 GO:0004672|GO:0006468
Psa1g1569 999 SMART serkin_6 756 994 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1569 999 Pfam Protein kinase domain 812 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1569 Psa-Chr1 108659828 108664597 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1569 55 999 Receptor kinase-like Gene Family AT3G02130 55.524 0.0 1033
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Psa1g1569 Pkinase 9.8e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1569 - - vra:106772082 1327.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1569 1 108659828 108664597 Psa1g1569 1 108659828 108664597 ECH