Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1531 ATGTTTTCTTCTTATTTTACTTCAATTATCATCAAATGGACTTCCTTTACTCAATTCAACTCCTTCTTCTTCTTTCTTCTGTTCTTAACCTCTCAATACGACGCCGTTTCATCCTACTCCGACAAATCAACTCTTCTCCGTTTCAAAAACTCACTCTCCGATCCTGCCGGCGTACTATCCACGTGGAACCCTTCATCCGGCCACTGTTTATGGTATGGTGTCCGTTGTGATTCAGATTTCCGCGTGGTTGCTCTCAACATCACCGGTAATGGCGGCAGCGGTGATGGTCACCGGAGTTCACATCCTTGCTCCGATTTTGGTATGTTTCCTCTTTACGGATTTGGAATCAGGAGAAGCTGTGTTGATGTTAAGGGTTCTTTGTTAGGAAAGTTTCCATCTTTGATCAGTGAGTTAACTGAGCTTAGGGTTCTTTCTTTACCCTTCAATGGGTTGGAGGGTTCAATTCCTGAAGAGATTTGGAGTATGGAGAAATTGAATTTGGAGGTTTTGAATTTAGCTGCAAATGGTTTGAATGGTTCTGTTCCTGGTTTTGTTGGGAAGCTAAAAGGGGTGTATTTGTCTTTTAATCAATTCAGTGGAGTTATTCCTGAAGAGATTGGTAAGAACTGTGGGAAGCTTGAGCATTTGGATTTGTCTGGTAACTCTTTGGTTCAAGAGATTCCGAAGAGTTTGGGGAATTGTGTTGGGTTGAGGACGCTTTTGTTGTATTCGAATTTGTTGGAAGAGGGTATTCCTGCTGAATTTGGAAACCTTAAGAGGCTTGAGGTGTTGGATGTTTCGAGGAATACGCTAAGTGGTTCTATTCCTGGCGAGCTTGGGAATTGTAAAGAGCTTTCTGTTGTTGTGCTCTCCAACCTTTTCGATCCGGTTGGGGATGTTGAGTTTGTTACTTTGAACGATGAGTTGAATTATTTTGAAGGTGCAATGCCAGAGGAAATTGTGTCGCTTCCTAAGCTTAGGATTTTGTGGGCACCCATGGTGAATTTGGAGGGAAGTTTCCCTAGGAGCTGGGGTGCTTGTGCTAACTTGGAGATGGTGAATTTGGCTCAGAATTTCTTCACTGGAGATGGGAATATGTTGTCTGGTTCAGTTCCTGATTTTTCCAACAATGTTTGTTCTCCCTTTCCTTCCTGGAATGGGAATCTGTTCCAAACTGACGACGTGTCATCTCCTTATTCATCATACTTTTCATCAAAAGTTAGTGAGATAACCCTTTTTGCATCACAAGGTGGAGTTGGTCTTTCAGTTTTTCACAACTTTGAGCAAAACAACTTCACTGGCATTCAGTCATTGCCAATAGCTCATGACAGGATGGAGAAGAGTGGTTACACACTTCTTTTGGGAGAGAACAAGCTCACGGGACCATTTCCTACGTATTTGTTTGAGAAATGTGATGGATTAAATGCATTGCTTTTGAATATTTCAGGAACAATTCCCTTTACTCTAGGGGATTCAGTCTCTCTTGTTTCCTTGAACCTTAGTAAAAACCGGTTACAAGGTCCGATTCCCGCCAGCCTCGGACAGATGAAGGATCTGAAGTTCCTCTCTTTGGCTGGTAATAACTTGAGTGGCTCAATTCCTCCCAATCTGGGGCAGTTGTACTCTTTACAAGTCTTAGACCTTTCTACAAACTCTTTTACTGGTGAGATTCCAAAGTTTATCGGGAAAATGAGAAATCTGACACATGTTTTGCTCAATAACAACAACCTTTCTGGACAGATTCCTGTTGGTTTGGCTAATGTTACTACACTCACTGCATTTAATGTGTCTTTCAATAATTTATCTGGATACTTGCCATCAAATAGTACCTTGATAAAATGCAACAATGCTGTTGGAAATCCATTTCTAAGTTCCTGCCGTGGAGTTTCTCTAACTGTTCCATCAGCAAATCAACAAGGGCAGTTTGATGACAATTCTTCTAATACATCACAAACTCCTGGCAAAAATAGTGATAATGGTTTCAATGCTATTGAGATAGCAGCAATAACATCTGCTTCAGCCATTGTTTCGGTTCTTATAGCACTTATTGTTCTGTTTTTCTTCACGCGAAAGTGGAAGCCAAGGTCTAGGGTTGGTGGTTCTGTCAAAAGAGAAGTTACCGTGTTTACTGATATCGGTGTGCCATTGACATTTGAAAACGTTGTCCAAGCCACAGGAAATTTCAATGCAAGCAACTGTATTGGGAGTGGAGGATTTGGTGCAACTTATAAGGCAGAGATATCACAAGGAATCTTGGTGGCAGTGAAACGTCTTTCAGTTGGACGTTGCCAAGGTGTTCAACAATTTCATGCAGAGATTAAGACCCTTGGACGGCTTCATCATCCAAACCTTGTCACTCTTATTGGTTACCATGCTAGTGAAACAGAGATGTTTCTGATATACAATTATCTTTCAGGCGGTAATCTAGAAAAGTTCATCCAGGAGAGATCCACAAGGGCTGTAGATTGGAAAATTCTGTACAAGATTGCATTGGACATAGCGCCTGACGTGTATAGCTATGGTGTGGTGCTTCTTGAGTTGCTCTCAGATAAGAAAGCATTGGACCCTTCATTTTCTTCTTATGGAAATGGTTTCAACATAGTAGCATGGGGATGCATGCTTCTGAGTCAAGGAAGAGCGAAGGAGTTTTTTGCGGCAGGGTTATGGGACGCAGGACCAGAAAAAGATTTGGTAGAGGTTCTACACCTAGCTGTTGTTTGTACTGTTGATTCATTATCAACTAGACCTACAATGAAACAGGTTGTGAAAAGGTTAAAGCAACTTCAACCTCCATCATGCTAG 2802 0.4161 MFSSYFTSIIIKWTSFTQFNSFFFFLLFLTSQYDAVSSYSDKSTLLRFKNSLSDPAGVLSTWNPSSGHCLWYGVRCDSDFRVVALNITGNGGSGDGHRSSHPCSDFGMFPLYGFGIRRSCVDVKGSLLGKFPSLISELTELRVLSLPFNGLEGSIPEEIWSMEKLNLEVLNLAANGLNGSVPGFVGKLKGVYLSFNQFSGVIPEEIGKNCGKLEHLDLSGNSLVQEIPKSLGNCVGLRTLLLYSNLLEEGIPAEFGNLKRLEVLDVSRNTLSGSIPGELGNCKELSVVVLSNLFDPVGDVEFVTLNDELNYFEGAMPEEIVSLPKLRILWAPMVNLEGSFPRSWGACANLEMVNLAQNFFTGDGNMLSGSVPDFSNNVCSPFPSWNGNLFQTDDVSSPYSSYFSSKVSEITLFASQGGVGLSVFHNFEQNNFTGIQSLPIAHDRMEKSGYTLLLGENKLTGPFPTYLFEKCDGLNALLLNISGTIPFTLGDSVSLVSLNLSKNRLQGPIPASLGQMKDLKFLSLAGNNLSGSIPPNLGQLYSLQVLDLSTNSFTGEIPKFIGKMRNLTHVLLNNNNLSGQIPVGLANVTTLTAFNVSFNNLSGYLPSNSTLIKCNNAVGNPFLSSCRGVSLTVPSANQQGQFDDNSSNTSQTPGKNSDNGFNAIEIAAITSASAIVSVLIALIVLFFFTRKWKPRSRVGGSVKREVTVFTDIGVPLTFENVVQATGNFNASNCIGSGGFGATYKAEISQGILVAVKRLSVGRCQGVQQFHAEIKTLGRLHHPNLVTLIGYHASETEMFLIYNYLSGGNLEKFIQERSTRAVDWKILYKIALDIAPDVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWGCMLLSQGRAKEFFAAGLWDAGPEKDLVEVLHLAVVCTVDSLSTRPTMKQVVKRLKQLQPPSC* 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1531 933 Gene3D Ribonuclease Inhibitor 38 205 IPR032675 -
Psa1g1531 933 Pfam Leucine rich repeat N-terminal domain 40 77 IPR013210 -
Psa1g1531 933 SUPERFAMILY L domain-like 127 616 - -
Psa1g1531 933 ProSitePatterns Protein kinases ATP-binding region signature. 734 756 IPR017441 GO:0005524
Psa1g1531 933 Pfam Leucine Rich Repeat 212 234 IPR001611 GO:0005515
Psa1g1531 933 Gene3D Ribonuclease Inhibitor 206 296 IPR032675 -
Psa1g1531 933 Pfam Protein tyrosine and serine/threonine kinase 731 834 IPR001245 GO:0004672|GO:0006468
Psa1g1531 933 Gene3D Ribonuclease Inhibitor 297 383 IPR032675 -
Psa1g1531 933 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 836 932 - -
Psa1g1531 933 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 18 166 - -
Psa1g1531 933 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 166 363 - -
Psa1g1531 933 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 392 834 - -
Psa1g1531 933 Gene3D Transferase(Phosphotransferase) domain 1 832 930 - -
Psa1g1531 933 SUPERFAMILY Protein kinase-like (PK-like) 718 928 IPR011009 -
Psa1g1531 933 SMART LRR_typ_2 185 209 IPR003591 -
Psa1g1531 933 SMART LRR_typ_2 564 587 IPR003591 -
Psa1g1531 933 SMART LRR_typ_2 138 162 IPR003591 -
Psa1g1531 933 SMART LRR_typ_2 516 540 IPR003591 -
Psa1g1531 933 SMART LRR_typ_2 258 282 IPR003591 -
Psa1g1531 933 SMART LRR_typ_2 210 234 IPR003591 -
Psa1g1531 933 Gene3D Phosphorylase Kinase; domain 1 692 803 - -
Psa1g1531 933 Gene3D Ribonuclease Inhibitor 421 631 IPR032675 -
Psa1g1531 933 ProSiteProfiles Protein kinase domain profile. 728 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1531 933 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 836 932 - -
Psa1g1531 933 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 392 834 - -
Psa1g1531 933 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 166 363 - -
Psa1g1531 933 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 18 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1531 Psa-Chr1 104538477 104541847 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1531 836 933 Receptor kinase-like Gene Family AT3G02130 91.837 1.29e-50 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Psa1g1531 PK_Tyr_Ser-Thr 5.9e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1531 - - vra:106772082 1045.8