Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1496 ATGGGAAGGGGAAGAGTCGAATTGAAAAGGATAGAGAATAAGATAAACAGACAAGTAACATTTGCAAAGAGAAGAAATGGTCTTCTTAAGAAAGCTTATGAGTTGTCTGTTCTTTGTGAAGCTGAGGTTGCTCTTATTATCTTCTCCAACAGAGGCAAACTTTATGAGTTTTGTAGCAGTCCTAGCATGCTGAAAACCTTAGATAGGTATCAAAAATGTAGCTATGGTGCAGTAGAAGTGAACAAACCTGCCAAAGAGCTTGAGAGCAGTTACCGTGAGTACTTGAAGCTGAAAGCAAGGTTTGAATCTCTCCAAAGAACCCAAAGAAACCTTCTAGGTGAAGATTTGGGTCCTTTAGGCACTAAAGATCTGGAGCAGCTTGAACGCCAACTCGATTCGTCTCTCAAACAAGTCAGGTCTACTAAGACTCAATTCATGCTGGACCAATTAGCTGATCTTCAAAATAAGGAGCATATGTTGATGGATGCAAATAGATCTTTGACTATGAAGCTGGAAGAAATAAATATAAATTCAAGAAACCAGTATAGACAAACATGGGAAGGTGGTGATCAAAGTATGGCATATGGTAATCAAAATGCTCACTCACAAAGCTTCTTTCAGCCTTTGGAATGTAACCCAACATTGCAGATAGGGACTGATTATAGGTACAGTCCAGTAGCATCAGATCAGCTAACTGCAACAACTCAAGCTCAACAAGTGAATGGATTTATTCCTGGATGGATGCTTTAA 750 0.3933 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCEAEVALIIFSNRGKLYEFCSSPSMLKTLDRYQKCSYGAVEVNKPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLGTKDLEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEHMLMDANRSLTMKLEEININSRNQYRQTWEGGDQSMAYGNQNAHSQSFFQPLECNPTLQIGTDYRYSPVASDQLTATTQAQQVNGFIPGWML* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1496 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Psa1g1496 249 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Psa1g1496 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Psa1g1496 249 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Psa1g1496 249 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa1g1496 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Psa1g1496 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Psa1g1496 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Psa1g1496 249 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Psa1g1496 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Psa1g1496 249 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 234 - -
Psa1g1496 249 Coils Coil 124 144 - -
Psa1g1496 249 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Psa1g1496 249 PANTHER MADS BOX PROTEIN 1 234 - -
Psa1g1496 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1496 Psa-Chr1 101267006 101270162 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1496 1 249 MADS-box Gene Family AT5G15800 72.624 6.17e-123 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Psa1g1496 K-box 1.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1496 K09264 - gmx:100785322 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1496 1 101267006 101270162 Psa4g1081 4 79272735 79277194 ECH
Psa1g1496 1 101267006 101270162 Psa1g1496 1 101267006 101270162 ECH
Psa1g1496 1 101267006 101270162 Psa3g4635 3 429768699 429772820 ECH