Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1490 ATGACATCTGCAGCCTCACTTGATAATTCTCTATCGGACATGTACCGTTCTCCTCCAAGGCCCTTACCATATGATGCAGAGCCTCGGTTTTTCCGTTCACAACGTGATGGACTAGTTTCAAGGCGTGAGAAAAGTTCAAGCCATTCAAATGACGAAACTGAACCTCTAAGAAGCGATGTAGATGCGGATCCAGAGCCTCTAAACTCAGCAGACAAATGGAATGAATGTGCCCGAGAAGATGAATCGAAGATATACCGTTCTAAGTCCGCATTAAGACTTTCATCCGCAAAATATACACCTGGAGTTGGGCTCGTTTACACGTCATCATCGGAAGAAGAGGATATCTGTCCAACTTGTCTTGAAGAATACACTAAAGAGAATCCAAAGATAATGACAAAATGCGCTCATCATTTTCACCTTGGTTGCATCTATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTTTGTGGAAAGGAAATGGAATTCGATGAGACAACATACTCTTGA 507 0.43 MTSAASLDNSLSDMYRSPPRPLPYDAEPRFFRSQRDGLVSRREKSSSHSNDETEPLRSDVDADPEPLNSADKWNECAREDESKIYRSKSALRLSSAKYTPGVGLVYTSSSEEEDICPTCLEEYTKENPKIMTKCAHHFHLGCIYEWMERSDNCPVCGKEMEFDETTYS* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1490 168 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 165 IPR013083 -
Psa1g1490 168 ProSiteProfiles Zinc finger RING-type profile. 116 156 IPR001841 -
Psa1g1490 168 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 165 - -
Psa1g1490 168 MobiDBLite consensus disorder prediction 1 73 - -
Psa1g1490 168 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 165 - -
Psa1g1490 168 SUPERFAMILY RING/U-box 110 163 - -
Psa1g1490 168 Pfam RING-H2 zinc finger domain 111 156 IPR024766 GO:0008270
Psa1g1490 168 SMART ring_2 116 156 IPR001841 -
Psa1g1490 168 MobiDBLite consensus disorder prediction 29 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1490 Psa-Chr1 100980565 100986503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1490 1 165 C3H Transcription Factor Family AT5G15790 55.294 2.38e-61 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1490 - - gmx:100777068 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1490 1 100980565 100986503 Psa1g1490 1 100980565 100986503 ECH