Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1483 ATGGTTCGTCAATCTAATTTGGTTATCATTGGTGTCTCTGTTGGTTTGGCCCTTGGAGTTCTGATTTCTTGCCTCATATTTTTCGGCATAAGGTGGTGCAAGAAGCGTTCTCATATTACACGATCTGCAAATGAGCCTAGTTTAACAACTCTCCCGATACGAACAAATGGAGTTGAAGCAAGTACCGACTTTAGTGCATCGATCACTAGTTCCGTAACCACGTCAAGGTCAGAAAATCTACCGAGAAATTCCAATTTCTCTTGGTGGAATCATCAAAACAAAGACCGGTTTGCTTCAGCATCAGGCATTCTAAAATATTCATACAAAGAACTTCAAAAAGCCACACAAAATTTCACAACTACCTTGGGAGAAGGATCATTTGGCACGGTTTATAAAGCGACAATGCCTACAGGAGAGGTGATAGCTGTGAAAGTGCTAGCACACAATTCCAAACAAGGGGAGAGAGAATTCCAAACAGAGGTGTCTCTGCTAGGAAGACTACATCACAGGAATCTTGTGAATCTGCTTGGATATTGTGTAGATAAAGGACAGCACATACTGGTTTATCAGTTCATGAGCAATGGAAGTTTAGCAAGTATTTTATATGGTGAAGAACAGAAGTTAAGTTGGGATGAAAGGATGCAAGTTGCTCTTGATATTTCACATGGAATAGAGTATCTTCATGAAGGAGCAGTCCCACCGGTCATACATCGTGATTTGAAGTCTCCCAACATATTGCTAGATGACACGATGAGAGCTAAGGTTGCTGATTTTGGTCTCTCAAAGGAAGAGATCTTCGACGGCCGAAATTCCGGTCTTAAAGGTACATATGGCTACATGGACCCGGCATACATTTCCACAAACAAGTTAACAACCAAGAGTGACATATACAGTTTTGGTATCATACTTTTTGAGCTCATCACAGCCATCCATCCGCATCAAAATTTGTTGGAATATGTTAACCTTGCTGCAATGGAACATGATGGTATAGATGAGATACTTGACAAGCAACTTGTTGGAAAATGCAATGTTGTAGAAGTGAGGCAACTTGCTAAAATTGCACACAAATGCTTACACAAATCACCAAAGAAAAGACCCTCCATAAGTGAAGTTTCACAAAGCATATCAAGAATAAAGCAAAGGAGATTGCGCCATGTTATGGAAGATAACTTGTCATTTGCACATAGTAATAACTTTTCAAGAACTTCGAGTCGATTAGACGATCGACAAGTTGAATTAAGTAGGATAGTTACCATGACCATCAAAGAAACTGTATGA 1278 0.3983 MVRQSNLVIIGVSVGLALGVLISCLIFFGIRWCKKRSHITRSANEPSLTTLPIRTNGVEASTDFSASITSSVTTSRSENLPRNSNFSWWNHQNKDRFASASGILKYSYKELQKATQNFTTTLGEGSFGTVYKATMPTGEVIAVKVLAHNSKQGEREFQTEVSLLGRLHHRNLVNLLGYCVDKGQHILVYQFMSNGSLASILYGEEQKLSWDERMQVALDISHGIEYLHEGAVPPVIHRDLKSPNILLDDTMRAKVADFGLSKEEIFDGRNSGLKGTYGYMDPAYISTNKLTTKSDIYSFGIILFELITAIHPHQNLLEYVNLAAMEHDGIDEILDKQLVGKCNVVEVRQLAKIAHKCLHKSPKKRPSISEVSQSISRIKQRRLRHVMEDNLSFAHSNNFSRTSSRLDDRQVELSRIVTMTIKETV* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1483 425 SUPERFAMILY Protein kinase-like (PK-like) 88 373 IPR011009 -
Psa1g1483 425 SMART serkin_6 116 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1483 425 Gene3D Transferase(Phosphotransferase) domain 1 192 400 - -
Psa1g1483 425 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Psa1g1483 425 ProSiteProfiles Protein kinase domain profile. 116 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1483 425 Gene3D Phosphorylase Kinase; domain 1 82 191 - -
Psa1g1483 425 CDD STKc_IRAK 122 378 - -
Psa1g1483 425 PANTHER OS01G0750732 PROTEIN 9 419 - -
Psa1g1483 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Psa1g1483 425 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 2 9 419 - -
Psa1g1483 425 Pfam Protein tyrosine and serine/threonine kinase 118 374 IPR001245 GO:0004672|GO:0006468
Psa1g1483 425 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1483 Psa-Chr1 100614317 100617373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1483 86 380 Receptor kinase-like Gene Family AT1G79620 42.581 6.43e-72 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Psa1g1483 PK_Tyr_Ser-Thr 2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1483 - - gmx:100819995 724.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1483 1 100614317 100617373 Psa1g1483 1 100614317 100617373 ECH