Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa1g1465 | ATGTCTCATTCTTTGAATCCCTTCGCAACAACTCACTCCGATTCCGGTTCCGATTCTGACGTTGACTCACTGAGTCAATTCGTCACCGACCTCTTCGAAAATCGCTCCCCCGCCGATCCGGCTTATCCCTGGGATGATGATGACGATGAGGATGATGAAAGAGACATCAACCCTTTCTCCGACTTTGCTTGCGATCAAGCTGATCCAGAATTAGAATTAGGGTTTGGAGATGAAATTGAAACTCAGTACAACGATAATTATGATGATGTTTTTGATTTTTCAGTCGGTGGTGGTGATTCCACTGGGCTTAGGGTTATTGGATTTGGTTCCGATTCGGAATCCAGTGGTCATGATGAAGAATATGGATATGAAGGAAATAATGATGAGGATGATGAGAGGGTTGGTGGATTGTGTTGGGATAGTCTTTGTTTGGAAGATCATAGGAGTATTTTGAATGATTGGGAGGAAGTGGTGGAAGAGAGGGTGAATGAGATTGAAGATTCTTCTAGTTTGTTGATTGGTGAGGTTGATGTTGATGTTGATGATCAGTCGGTGGCGACTGGGTTTGAGGAGGATGAAGAGGAACAAGGGGAAGAAGCGTTGCGGTATTTGGAATGGGAGATTCTATTGGCTTATAACAATTTCGAGAGGAGTGGTGGACTGGAGCACGACGATGAGAATATTAATAACTTGTATTTAGCTGTTCAGGAAGGTTTTATTTCGGGAAACACTGATTACGATATTCTTTTCAGTCAGTTATTGGAGAATGAGAGTGGTTTGAAGGGTAGTCCGCCGGCGGCCAAGAGTTTTGTGGAGAATCTCCCTTTGGTGGAATTGACTGAGGAGGAGTTGAAAAAGAAGGATGTCACATGTGCCATTTGTAGAGATGAGGTAATTGCGGAAGAGAAGGTGAGGAAGCTACCTTGCTCACATTGTTATCATGGAGATTGTATTTTGCCGTGGTTGAATATTCGCAACACGTGTCCTGTTTGTCGGTTCGAGTTGCCAACTGATGATGCTGATTACGAGCAGAGTAAGGTTCATAGAATTGCCCGTGATCTGTTGGATTTTGCAGCATAG | 1080 | 0.437 | MSHSLNPFATTHSDSGSDSDVDSLSQFVTDLFENRSPADPAYPWDDDDDEDDERDINPFSDFACDQADPELELGFGDEIETQYNDNYDDVFDFSVGGGDSTGLRVIGFGSDSESSGHDEEYGYEGNNDEDDERVGGLCWDSLCLEDHRSILNDWEEVVEERVNEIEDSSSLLIGEVDVDVDDQSVATGFEEDEEEQGEEALRYLEWEILLAYNNFERSGGLEHDDENINNLYLAVQEGFISGNTDYDILFSQLLENESGLKGSPPAAKSFVENLPLVELTEEELKKKDVTCAICRDEVIAEEKVRKLPCSHCYHGDCILPWLNIRNTCPVCRFELPTDDADYEQSKVHRIARDLLDFAA* | 360 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa1g1465 | 359 | SMART | ring_2 | 291 | 331 | IPR001841 | - | |
| Psa1g1465 | 359 | ProSiteProfiles | Zinc finger RING-type profile. | 291 | 332 | IPR001841 | - | |
| Psa1g1465 | 359 | MobiDBLite | consensus disorder prediction | 109 | 129 | - | - | |
| Psa1g1465 | 359 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
| Psa1g1465 | 359 | PANTHER | RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING | 3 | 359 | - | - | |
| Psa1g1465 | 359 | SUPERFAMILY | RING/U-box | 278 | 338 | - | - | |
| Psa1g1465 | 359 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Psa1g1465 | 359 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 254 | 338 | IPR013083 | - | |
| Psa1g1465 | 359 | CDD | RING-H2_RNF126_like | 290 | 332 | - | - | |
| Psa1g1465 | 359 | MobiDBLite | consensus disorder prediction | 113 | 129 | - | - | |
| Psa1g1465 | 359 | Pfam | Ring finger domain | 290 | 332 | IPR001841 | - | |
| Psa1g1465 | 359 | PANTHER | ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN | 3 | 359 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa1g1465 | Psa-Chr1 | 99712708 | 99716620 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa1g1465 | 206 | 355 | C3H Transcription Factor Family | AT3G02340 | 47.879 | 9.65e-47 | 162 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa1g1465 | - | - | gmx:100812037 | 328.561 |
Event-related genes