Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1452 ATGGAAATTTCAAGAGGGGAAGGTTTTCTATGTTTTGTGACATTGTTCTTGTTTTTGTGTTCTACTAATGCTTTGCTTTCTCCTAAAGGAATTAACTTTGAAGTTCAAGCTTTGATGAGTATAAAAGCTTCATTAATGGATCCTCATGGAATTCTAGAGAATTGGGATGCTTCATTAATGGATCCTCATGGAATTCTAGAGAATTGGGATGGTGATGCTGTTGATCCATGTAGTTGGAATATGGTTACTTGTTCTACTGAGAATCTTGTTATTAGTTTGGGAATTCCTAGTCAGAATTTATCTGGTACATTATCACCAAGCATTGGAAAGTTAACAAATCTTCAAACTATTATGTTACAGAATAACAACATAACTGGACCAATCAGTTCAGAGCTAGGAAAACTTTCCATGCTTCAAACACTTGATCTCTCTGATAACTTCTTCAATGGAAAGATTCCTACTTCTCTTGGTCATCTGAGAAAGCTTCAATACTTGAGGCTTAATAATAACAGTTTTTCCGGTGAATGTCCTGAGTCGTTGGCGAACATGGCGCAACTTACTTTTCTTGATTTGTCATTCAACAATCTTAGTGGCAGTGTGCCTAGAATCTTGGCCAAATCATTCAGTATTGTTGGAAACCCTCTGGTCTGCGCGACAGCAAAAGAAACAAACTGCCATGGGATGAAACTCATGCCTATGTCAATGAACTTAAACAATACTAACGATGCATTACCATCAAGAAGAACAAAAGCTCACAAAAGGGTCATTGCGTTTGGTTTAAGTCTTGGATGCCTTTGCTTATTAGTCCTTGTCCTTGGTTTCGGATTTTTACTATGGAGGAGACACAAACATAATCAACAAACATTCTTTGATGTTAAAGACCGACATCACGAAGAAGTCTACCTAGGAAACTTGAAGAGGTTCCAATTAAGAGAACTCCAAATTGCTACTCACAACTTCAGCAACAAAAACATATTAGGAAAAGGTGGTTTCGGCATTGTCTACAAAGGAATTCTTTCGGACGGTACGCTTGTCGCTGTAAAGAGGCTTAAAGACGGAAACGCCAAGGGAGGAGAGATACAATTTCAGACCGAAGTTGAAATGATCAGCTTAGCAGTTCATCGAAACCTTCTCAAACTCTATGGATTTTGTATGACTTCATCAGAAAGACTTTTGGTTTACCCCTACATGTCAAATGGTAGCGTCGCTTCTCGTCTCAAAGCTAAGCCGGTGTTGGATTGGGGCACAAGGAAGCAAATTGCATTAGGAGCAGGAAGAGGACTATTATACCTACATGAGCAATGTGATCCAAAGATAATCCATAGAGACGTGAAAGCTGCAAATATACTACTTGATGATTATTGTGAGGCAGTAGTTGGAGATTTTGGTTTGGCAAAGCTTTTAGACCACAAAGATTCACATGTCACAACTGCGGTTAGGGGCACAGTAGGACATATTGCACCTGAGTATCTTTCCACAGGACAGTCTTCTGAAAAGACTGATGTTTTTGGATTTGGCATTTTGCTTCTTGAATTGATTACTGGTTTGAGGGCCCTTGAATTTGGAAAGGCTGCCAACCAAAAAGGAGCCATGCTGGACTGGGTAAAGAAAATTCATCAAGAGAAGAAGCTAGATTTGCTTGTAGACAAAGATCTCAAGAACAACTATGACAAGATTGAGCTTGAGGAAATAGTTCAAGTTGCACTTTTGTGTACACAATATCTTCCGAGTCACAGACCGAAAATGTCCGAAGTCGTACGCATGCTCGAAGGCGACGGTCTAGCCGAGAAATGGGAAGCTTCTCAAAGAGCTGACAACACTAACAAGTGCAAACCACATGAATTATCTTTGTCAGATCGATTTTCCGATCTTACCAATGACTCTTCTTTGTTAATCCAAGCCATGGAGCTTTCTGGTCCAAGGTGA 1926 0.3972 MEISRGEGFLCFVTLFLFLCSTNALLSPKGINFEVQALMSIKASLMDPHGILENWDASLMDPHGILENWDGDAVDPCSWNMVTCSTENLVISLGIPSQNLSGTLSPSIGKLTNLQTIMLQNNNITGPISSELGKLSMLQTLDLSDNFFNGKIPTSLGHLRKLQYLRLNNNSFSGECPESLANMAQLTFLDLSFNNLSGSVPRILAKSFSIVGNPLVCATAKETNCHGMKLMPMSMNLNNTNDALPSRRTKAHKRVIAFGLSLGCLCLLVLVLGFGFLLWRRHKHNQQTFFDVKDRHHEEVYLGNLKRFQLRELQIATHNFSNKNILGKGGFGIVYKGILSDGTLVAVKRLKDGNAKGGEIQFQTEVEMISLAVHRNLLKLYGFCMTSSERLLVYPYMSNGSVASRLKAKPVLDWGTRKQIALGAGRGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHKDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGLRALEFGKAANQKGAMLDWVKKIHQEKKLDLLVDKDLKNNYDKIELEEIVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRADNTNKCKPHELSLSDRFSDLTNDSSLLIQAMELSGPR* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1452 641 Gene3D Phosphorylase Kinase; domain 1 289 396 - -
Psa1g1452 641 SUPERFAMILY L domain-like 52 210 - -
Psa1g1452 641 SMART serkin_6 320 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1452 641 Gene3D Transferase(Phosphotransferase) domain 1 397 609 - -
Psa1g1452 641 ProSiteProfiles Protein kinase domain profile. 320 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1452 641 Pfam Leucine rich repeat N-terminal domain 57 85 IPR013210 -
Psa1g1452 641 Pfam Leucine rich repeat N-terminal domain 34 56 IPR013210 -
Psa1g1452 641 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Psa1g1452 641 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 5 57 - -
Psa1g1452 641 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 57 641 - -
Psa1g1452 641 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 5 57 - -
Psa1g1452 641 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 57 641 - -
Psa1g1452 641 SMART LRR_typ_2 111 135 IPR003591 -
Psa1g1452 641 SMART LRR_typ_2 183 206 IPR003591 -
Psa1g1452 641 SMART LRR_typ_2 159 182 IPR003591 -
Psa1g1452 641 Pfam Leucine rich repeat 138 196 IPR001611 GO:0005515
Psa1g1452 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Psa1g1452 641 SUPERFAMILY Protein kinase-like (PK-like) 297 590 IPR011009 -
Psa1g1452 641 Pfam Protein kinase domain 321 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa1g1452 641 Gene3D Ribonuclease Inhibitor 31 227 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1452 Psa-Chr1 98663210 98667577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1452 1 641 Receptor kinase-like Gene Family AT5G16000 72.994 0.0 953
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Psa1g1452 Pkinase 3.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1452 - - gmx:100806650 1037.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1452 1 98663210 98667577 Psa1g1452 1 98663210 98667577 ECH