Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1438 ATGGAAAATGAAGAACCAGTTCTTCCTCAATCTCACGGTTGTAACATTGAAGGTATGGATCGGGTGGTGGCAACAGTTACTGGTTACCATGACCCTGAGCGATTCAACCTTATTAAGCTGATTTCGTATGCCGGTGCTAATTACGTTGGGATGATGTCCAAATCAATAACGCATCTGGTGTGTTGGAAGTTTGAAGGAAAGAAATATGATATTGCCCGAAAATTTAGAATACCTATAGTCAACCACCGTTGGATTGAAGACTGCATAAAGGAAGGAAGGCGTGTCCCGGAAGATTCGTATATCATGCAAAGTGGACATGAAGTAGGGCCATTGTTAATGGAAGTTCCTGTCACCGTTCAAGCAAATAGCTTGTCGAAGAAAAAAGTGGTTAGTCGCAGTTTATGTGATATTGGGTCTAAAAGGCAAAATAGTGACTTCGGTTCTTGGCTCTGTGGAATTTCTGTTTTGGAAGATTCTTCTTTATTGAAAAAGCATGAGGAGTCAAGTTCATATTCATCTAGACTGTCAAAGAAAGGTAAAAGAAATAGTGGAAATGAAGTAAGTACCGAAGCTAGGCATTCTCGTAAAGGAAGAAGGGTTGTTGAAAATGATGGTAGAGTGGCGTTGGACCCTATAATTTTGGATTTAAGCACAGACGACCAGGTTAGTGAAATGGATAGGCTACACACCGAAGCTGCAGCTACCTCTACCATTTCTAACCGTGTCAATATTGACAATATTCAAGAAAATAGTGAAGGACTTGATACTGGACTATCTAGACAAAGTGGAACTATCGATGGAAGTTCAGATGGCATTGAACAGAGTAGAGATTCATATCATTTATCTACTCCCACAAATTCAACTTTGTTTATTGAAGATCCTCTTCCTTTGACACAAACTTCAGTAGACTTATGTTCCAGTGCTGCAGAAAAGTCCACCAGTGGTGACGTCGTTGATGATTTTGATGACATACCTACTTCAAATTACTTGTCATGTGTTATATGTTTCACAGATTTCAGTTCAACAAGGGGGATTTTAGCTTGTGGACATCGGTTTTGTTTTCCATGCATCCAGGGTTGGGTTGATCACAGAATTGCAATGGGAAAAATTTCAACCTGTCCTTTGTGCAAGGCAAGTATTACAGGGATCAAGAAAGTTGAGCATGCAGCCACCACTGATCAAAAAGTTTACTCCCAGACAATTCCATGTGACTACACAAGCTCAGATGTTTTTATTCCAGTGGATCGAGAATTTCGAGACAATGGCTTAGAGTCCTCCCGAGCAGGTGCTTGTGTAATTTGCTGTGGTCGAGAACCGGAGGATCTACTTCAGAATTGCGATGTATGTCGAATTCGAAGAATACATTCCTATTGCATGGACCCTCCTTTACTGCCTTGGACATGCAGTCCCTGCAAGGAACTTCGAATGATTTATCGTCACCGTTCATATTAG 1452 0.4091 MENEEPVLPQSHGCNIEGMDRVVATVTGYHDPERFNLIKLISYAGANYVGMMSKSITHLVCWKFEGKKYDIARKFRIPIVNHRWIEDCIKEGRRVPEDSYIMQSGHEVGPLLMEVPVTVQANSLSKKKVVSRSLCDIGSKRQNSDFGSWLCGISVLEDSSLLKKHEESSSYSSRLSKKGKRNSGNEVSTEARHSRKGRRVVENDGRVALDPIILDLSTDDQVSEMDRLHTEAAATSTISNRVNIDNIQENSEGLDTGLSRQSGTIDGSSDGIEQSRDSYHLSTPTNSTLFIEDPLPLTQTSVDLCSSAAEKSTSGDVVDDFDDIPTSNYLSCVICFTDFSSTRGILACGHRFCFPCIQGWVDHRIAMGKISTCPLCKASITGIKKVEHAATTDQKVYSQTIPCDYTSSDVFIPVDREFRDNGLESSRAGACVICCGREPEDLLQNCDVCRIRRIHSYCMDPPLLPWTCSPCKELRMIYRHRSY* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1438 483 ProSitePatterns Zinc finger RING-type signature. 348 357 IPR017907 -
Psa1g1438 483 MobiDBLite consensus disorder prediction 167 202 - -
Psa1g1438 483 PANTHER F5A8.9 PROTEIN 163 481 - -
Psa1g1438 483 PANTHER F5A8.9 PROTEIN 16 164 - -
Psa1g1438 483 MobiDBLite consensus disorder prediction 251 278 - -
Psa1g1438 483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 402 IPR013083 -
Psa1g1438 483 ProSiteProfiles BRCT domain profile. 16 102 IPR001357 -
Psa1g1438 483 SMART BRCT_7 16 92 IPR001357 -
Psa1g1438 483 ProSiteProfiles Zinc finger RING-type profile. 332 377 IPR001841 -
Psa1g1438 483 SUPERFAMILY BRCT domain 19 102 IPR036420 -
Psa1g1438 483 SMART ring_2 332 376 IPR001841 -
Psa1g1438 483 Pfam Zinc finger, C3HC4 type (RING finger) 332 376 IPR018957 GO:0046872
Psa1g1438 483 Pfam twin BRCT domain 22 84 IPR001357 -
Psa1g1438 483 Gene3D BRCT domain 17 102 IPR036420 -
Psa1g1438 483 SUPERFAMILY RING/U-box 331 383 - -
Psa1g1438 483 SUPERFAMILY FYVE/PHD zinc finger 425 474 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1438 Psa-Chr1 97496947 97502905 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa1g1438 51 108 Core DNA Replication Machinery Family AT4G02110 47.458 5.51e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1438 - - cam:101495587 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa1g1438 1 97496947 97502905 Psa1g1438 1 97496947 97502905 ECH