Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa1g1418 ATGGAAAACAACAGTTGGATTCCCGTGGCAGACGAAAGAAAGGCTTATGGCACATCAAGAAATCATTCATCGGTTTTCTCGGACAATATGCAATTTCTATCTTCTGAGGAACCAATTCTCCGCAAAGAGGAATATATGAACCTGGAGACATTACCTGCAGCTCAAGCTCATGTCACTGCTAATTATAGCATGCCAAAAGGGGGACAATCTGGCCCTTCTACTGTTCATGACCTGCCTTGTTTCCCTGATGACCGTTCGTCAATCCCCCCAGTTGCTAATATGGATGTGCTTAGTAACTTACCTGTTTATGATGGTGGAAGATATATGGATGCTAACACCAGATCCATTAGCAACTATTTTCCTCATCAACCCATAAATAATTGTGATACTGACATACTACAACCTACCAAAAGAAAAAAAATGATTTATGGATTTTCCAATCATTTTCCTGGCTGGAAGTCTTGTTTAGAATCGCAAGATACATGGACATGTCAACCACAAATGCTGGATTTTCAGATGAATTCTACTGTAAGACATGATGTTAATGATGTCTTGTCTGGTGTATCTTCGAATAACAATCAATGGAATAACCAGTTGATTCAGCCTTATTCCTCTCAAATACCTTTGGAAGTGCAGCAACTGTCACAATTTCCCCCCCTCTCTTCTATCAATTTTGAGAGCAATGGGGAAGAACTTACTAATCCGATGTTTCATTCTTCGGGAATTAGAGGGATAAACAACAATGAGGCAGATGATATGCTTAAACAAATCTTAGAGGAGCCAAGCCTTGAAAGCAATGATGTGATGGAAATCAACGTAGAGGAATTTGTCACTAAGGAATTTGTCACTAGTTTGAAATCTAGAAACCGTACTCTCGACATGGATCCTTTTGCTACTGGTAGAGAGGTTATGCAGGGCTTTACGTTGAACTCCAGCCTTCCTACTCTCACCGAACCCATACCAGTATCTTTGAATAACCAGTTGATTCAGCCTTATTCCTCTCAAACACCTTTGGAAGTGCAGCAACTGTCACAATTTCCCCCCCTCTCTTCTATCAATTTTGAGAGCAACGGGGAAGAACTTACTAATCCGGTGTTTCATTCTACGGGAATCAGAGGGATAAACAACAATGAGGCAGATGGTACGCTTAAACAAATCTTAGAGGAGCCAAGCCTTGAAAGCAATGATGTGATGGAAATCAACTTAGAGGAATTTGTCGCTAGTTTGAAATCTAGAAAGCGTACTCTCAACATGGATCCTTTTGCTACTGGTAAAGAGCTTATGCAGGGCATAGCTGAATTGGACAGTGGCTTTACATTGAACTCCAGCCTTCCTACTCTCACCGTGGATGTTTTTCCAATTGATGGAGAAGATATTCAAGACACAACTGAGTTCTGGACAAACACCAAAAAGAAAGTTGATGAGCCAACAACTGATCAAGAGACACAAACCAAGTCCTCAAATACTATAGTTAATGAGATAGACAGAAACAAATCAATGGAAATTGACATTGGATCGAATTCCATTATGTGTGCTCTCATAAGCAAGGTTCCTATTCCTATTGATGTAGAGGACAAACATGACATAATTGGATTCAACCAAGAGGAGAAAGTTGTTAAAAGGAATGTCAATGAGCCAAAAGTTGATCAAGAGAAGCAATTAAAATCCTCAAATACAACCGTTGATGTCGTTTCCTTGATTGATATTTTCACACATGATCAAATAACACAACATATTAATAGTCTGAGAAAGGAACCTCTTCAGATTACAACTGAAGATGGAACAGGAATTGATGCAAACACATGCCAATTATGTGAAAGGGAAAATCTTTACTTTGCACCGGTACCAATTTTTTGTATATGCTGTGGCCTCCCCATCGGGAGAAGAAAAACATATTTCTGTAGAAAAGATGAGGAATTTGATGCAGAGCGTTGCTTTTGCTCCTTCTGTTATAATGCATCTAAAGGCGGGTGTATCGCATTCAACGGAACATCTGTTTCTAAGGCAAATCTTGAAAAAAAGACAAATGATGAAGTACTTGAAGAACCGTGGGTTGAATGCAATAAATGCAAAAGATGGCAGCATCAAGTATGTGCACTCTACAACAGCAAAAAAGATTTGGACTGCAGTGCTGAGTATATATGTGCTGTATGCCGCTTAAAAGAAATTGAAAATGGAGTGCATGTTCCCTTACAAATGGCTACTGTTTATGGTGCTAAGGACTTACCAAGAACCATGCTTAGTGACCACTTAGAGAAAAGACTTTTTAAGCGTCTCATGGAAATGAGAGTAGATGGGGAAAAAGTGGAAGGAAGTGAGAATCTTGATAAGGTTTTGGCAGCAGAAAGTATTTCTATTAGAGAAGTGTTATCTATCGACGAACAATTTAAAGTGAAGAAACAGTTTCTTGACATCATCCCAGAAAAGAATTACCCAGATGAATTCTCTTATAGATCAAGAGTTATACTTTTGTTTCAGAAGATTGATGGAGTAGATATATGCATTTTTGGACTGTACGTCCAGGAGTTTGGCTCTGAATGTGGTAATCCGAATCGGCGTTGTGTGTACATTTCATATCTTGATTCTGTCAAATATTTTAGGCCTGAAAGAGTGATTGTGGAAGGAGAAGCACTTCGTACCTTCGTTTACCATGAGATATTGATTGGATACCTTGATTTTTGTAAGAAAAGGGGTTTCTCAACTTGCTACATATGGGCATGTCCTCCTTCAAAAAGGAATGATTATATACTATATTGTCATCCCAAAGACCAAAAGACTCCAAACAAGGATAAGCTACGCTCTTGGTATCATTCAATGCTAAAAAAGGCTACTGAAGAAAAAATTGTTGTTGGTTTAACCAACATATATGATCATTTCTTTGTTCCTACTGAAAAAGGGGGCTCCAAAGTGACGCTTTCTCGTTTGCCATACTTCAATGGAGACTTTTGGTGTGGTTCTGCTATGGAAAAAGCGAGGACCATTGAAAAAGAGAGCCGAGGAGATTATGAAAAAATGTTGAAGAAACAAGTGTCAACTAGAGCTTTGAAGACCATGGGACATCTCAATCCTTCGAAAGACGCTGCTAAAGACATTCTGGTGATGCAAAAATTGGGTCAAGATATATTGCCTACGAAGGAAAATTTCATTGTAGCTCACTTACAATATTCATGCATGCATTGCTGTGAAGTGATAATGTCTGGGAAGCGGTGGTTTTGCACTGAATGCAAGAAATTTCAAGAGTGTGAAAGATGCCATACTTCAAATGAACACACCTTAAAGAACGGTGAAGTGCATCCACTTTGTCAGGCCGTTGTTGATGATATCCCCTCCAGCACTAAGCATAATGATACCATCCTTAAGAATGGATTGTTTGAAGATAGGAACATCTTTTTGAGCTTCTGCCAAAAGTATCAGTTTCAGTTTGACACACTCCGGCGTGCCAAGTATTCCTCAATGATGATCCTTTACCATCTAAGCAATCCTAGTCCTATGAATTTTGGAAAACGTTGTAGTATTTGTTGCGCACACAACGTGTTCCAAAAGTGGTGGAAATGTGAGGTTTGTCCGGATTGTATCATTTGCTTTGCATGCTATAAGGACAGAGGTGTTGACTGCCATGAACACAAGTTGACTCAAAATGAACACAAGTTGGCTGAAAATAATTCAACATCACAATCTGATAATCAAGAGTCTAATGAGAAAATGATGCTGAAACTGGAGAATTTTTTGAAGAATGTATCTCAATTTCGGAATCATGAGTCACATGGGAAAAAGATGCTGAAACTGGAGATGAAGTTGAAGCATGTATTTCAATGTCAGGCAGCTAGTGCTAAACCTTGCTCTGATACATCATGTTGTCAATTCAAGAAGTTGTTCAATCATGCCAAAAGTTGCACAACTCATATTAAGGGGGGATGCGAGCATTGTAAAAAGCTATGGACTATACTAATTTCTCACTCCATGGATTGCAAAGACTCGGAATGTAGAATACAACATTGCAGCGTGCTAAAGAAGCGTTTAGAATATAGAGGAATGCGTTCGAAATCTTGA 4050 0.3899 MENNSWIPVADERKAYGTSRNHSSVFSDNMQFLSSEEPILRKEEYMNLETLPAAQAHVTANYSMPKGGQSGPSTVHDLPCFPDDRSSIPPVANMDVLSNLPVYDGGRYMDANTRSISNYFPHQPINNCDTDILQPTKRKKMIYGFSNHFPGWKSCLESQDTWTCQPQMLDFQMNSTVRHDVNDVLSGVSSNNNQWNNQLIQPYSSQIPLEVQQLSQFPPLSSINFESNGEELTNPMFHSSGIRGINNNEADDMLKQILEEPSLESNDVMEINVEEFVTKEFVTSLKSRNRTLDMDPFATGREVMQGFTLNSSLPTLTEPIPVSLNNQLIQPYSSQTPLEVQQLSQFPPLSSINFESNGEELTNPVFHSTGIRGINNNEADGTLKQILEEPSLESNDVMEINLEEFVASLKSRKRTLNMDPFATGKELMQGIAELDSGFTLNSSLPTLTVDVFPIDGEDIQDTTEFWTNTKKKVDEPTTDQETQTKSSNTIVNEIDRNKSMEIDIGSNSIMCALISKVPIPIDVEDKHDIIGFNQEEKVVKRNVNEPKVDQEKQLKSSNTTVDVVSLIDIFTHDQITQHINSLRKEPLQITTEDGTGIDANTCQLCERENLYFAPVPIFCICCGLPIGRRKTYFCRKDEEFDAERCFCSFCYNASKGGCIAFNGTSVSKANLEKKTNDEVLEEPWVECNKCKRWQHQVCALYNSKKDLDCSAEYICAVCRLKEIENGVHVPLQMATVYGAKDLPRTMLSDHLEKRLFKRLMEMRVDGEKVEGSENLDKVLAAESISIREVLSIDEQFKVKKQFLDIIPEKNYPDEFSYRSRVILLFQKIDGVDICIFGLYVQEFGSECGNPNRRCVYISYLDSVKYFRPERVIVEGEALRTFVYHEILIGYLDFCKKRGFSTCYIWACPPSKRNDYILYCHPKDQKTPNKDKLRSWYHSMLKKATEEKIVVGLTNIYDHFFVPTEKGGSKVTLSRLPYFNGDFWCGSAMEKARTIEKESRGDYEKMLKKQVSTRALKTMGHLNPSKDAAKDILVMQKLGQDILPTKENFIVAHLQYSCMHCCEVIMSGKRWFCTECKKFQECERCHTSNEHTLKNGEVHPLCQAVVDDIPSSTKHNDTILKNGLFEDRNIFLSFCQKYQFQFDTLRRAKYSSMMILYHLSNPSPMNFGKRCSICCAHNVFQKWWKCEVCPDCIICFACYKDRGVDCHEHKLTQNEHKLAENNSTSQSDNQESNEKMMLKLENFLKNVSQFRNHESHGKKMLKLEMKLKHVFQCQAASAKPCSDTSCCQFKKLFNHAKSCTTHIKGGCEHCKKLWTILISHSMDCKDSECRIQHCSVLKKRLEYRGMRSKS* 1350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa1g1418 1349 Pfam TAZ zinc finger 1265 1333 IPR000197 -
Psa1g1418 1349 SUPERFAMILY RING/U-box 1032 1092 - -
Psa1g1418 1349 SUPERFAMILY FYVE/PHD zinc finger 681 721 IPR011011 -
Psa1g1418 1349 Pfam Histone acetylation protein 775 988 IPR013178 GO:0004402|GO:0006355|GO:0016573
Psa1g1418 1349 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 736 1163 IPR031162 GO:0004402
Psa1g1418 1349 SMART KAT11_2 769 1064 IPR013178 GO:0004402|GO:0006355|GO:0016573
Psa1g1418 1349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 677 722 IPR013083 -
Psa1g1418 1349 CDD PHD_HAC_like 646 718 - -
Psa1g1418 1349 SMART TAZ_2 1253 1334 IPR000197 -
Psa1g1418 1349 ProSiteProfiles Zinc finger PHD-type profile. 644 721 IPR019787 -
Psa1g1418 1349 SUPERFAMILY RING/U-box 1146 1201 - -
Psa1g1418 1349 ProSiteProfiles Zinc finger TAZ-type profile. 1252 1336 IPR000197 -
Psa1g1418 1349 Gene3D - 1049 1099 IPR043145 -
Psa1g1418 1349 PANTHER CBP/P300-RELATED 471 1338 IPR013178 GO:0004402|GO:0006355|GO:0016573
Psa1g1418 1349 SUPERFAMILY TAZ domain 1252 1336 IPR035898 -
Psa1g1418 1349 Gene3D TAZ domain 1249 1349 IPR035898 -
Psa1g1418 1349 PANTHER HISTONE ACETYLTRANSFERASE HAC2 471 1338 - -
Psa1g1418 1349 ProSiteProfiles Zinc finger ZZ-type profile. 1052 1105 IPR000433 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa1g1418 Psa-Chr1 96529422 96536710 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Psa1g1418 HAT_KAT11 2.3e-30 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa1g1418 K04498 - aprc:113866525 1053.51